Geovibrio thiophilus: EP073_00730
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Entry
EP073_00730 CDS
T05803
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
gtl
Geovibrio thiophilus
Pathway
gtl02024
Quorum sensing
gtl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP073_00730 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
EP073_00730 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtl03019
]
EP073_00730 (hfq)
03036 Chromosome and associated proteins [BR:
gtl03036
]
EP073_00730 (hfq)
Messenger RNA biogenesis [BR:
gtl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
EP073_00730 (hfq)
Chromosome and associated proteins [BR:
gtl03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
EP073_00730 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
DUF150_C
Motif
Other DBs
NCBI-ProteinID:
QAR31976
UniProt:
A0A410JUX2
LinkDB
All DBs
Position
158003..158506
Genome browser
AA seq
167 aa
AA seq
DB search
MSIYAQIEFVFMHNARNKNVPLMFIMRNKERFRGKIVDFDQYHFIIDDADIKILLSKRDI
ATVASAKTVVDIDFISKIYYHTHQGKHPRHTRPPMQDIFLNEVRKSKSPIISFLTNGVKI
RGSLIGFDNYTILTSFEGRQQLLYKSAISTVFPLYQYGEIIKYDDER
NT seq
504 nt
NT seq
+upstream
nt +downstream
nt
atgtctatttatgcccagattgaatttgtgttcatgcacaatgcgaggaataagaacgtt
ccgttgatgttcattatgcgcaacaaggaacggttcaggggaaagattgtggatttcgat
cagtatcacttcattatagacgatgctgatattaagattctgctctctaagagggatatt
gcgacggtcgcttctgcgaaaaccgttgtggatatagacttcatcagtaaaatttattac
cacacgcatcagggcaagcacccgaggcacacacgcccgcccatgcaggatatttttctg
aacgaagtgcgcaaatccaagtctcctattataagctttctgaccaacggggttaagata
agaggctctctcatagggtttgataattatactattctcacatcctttgaaggcaggcag
cagcttctttacaaaagcgctatttcaactgtattccccctctaccagtacggtgagata
ataaaatacgatgacgagagataa
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