Geovibrio thiophilus: EP073_04970
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Entry
EP073_04970 CDS
T05803
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
gtl
Geovibrio thiophilus
Pathway
gtl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gtl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EP073_04970 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtl03021
]
EP073_04970 (rpoC)
03400 DNA repair and recombination proteins [BR:
gtl03400
]
EP073_04970 (rpoC)
Enzymes [BR:
gtl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EP073_04970 (rpoC)
Transcription machinery [BR:
gtl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EP073_04970 (rpoC)
DNA repair and recombination proteins [BR:
gtl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EP073_04970 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QAR32772
UniProt:
A0A3R5XX23
LinkDB
All DBs
Position
1071704..1075759
Genome browser
AA seq
1351 aa
AA seq
DB search
MKKSTLFDEKAHVFFDSIAIRIASPDKIRAWSSGEVTKPETINYRTFKPERDGLFCAKIF
GPVKDWECLCGKYKRMKHRGIVCEKCGVEVIQSKVRRERMGHIDLASPVCHIWFFKGTPS
RIGSLLDLSIKDIERIIYFESYIVTNPKETPLKEKELLTEDHYRRAVDEYGPNAFVAKIG
AEALKDLLKQVDLDILLLELKEDLRDTTSMQKKLKLAKRLRVVEAFRKSGNRPEWMVLDV
VPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLMELNAPEIIIRNEKRMLQE
AVDALFDNGRRGRVIRSSNKRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVAGPHL
KMHQCGIPKLMALELFKPFLYYKLEKERGIASTIKQAKRMVEEQRPEVWDVLEEVIREHP
VLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCPAFNADFDGDQMAVHVPLSYEAQLEA
RTLMLACYNILSPAHGKPLAVPTQDMVLGIYYLTRGAKNAKGAGKIFSSPKEVRIAYDQG
QLDVHAEIKVRINGKRYDTVTGRIILFEVVPAGIDFEVVNQLFTKKDLVKLVDYIYKKLG
NYHTVEFLDNLKDLGFAQACRAGFSICLDDLIIPAEKPELINQAMQKVREIEEHYREGAL
TSGERYNQIIDVWSTTNDKVTDKMMKTIENQGGDKSKEYKRDRFYNAIHVMAHSGARGSK
AQISQLAGMRGLMAKPSGEIIETPITSNFREGLTVLQYFISTHGARKGLADTALKTANSG
YLTRRLVDVAQDVIISEEDCGTIRGIEISALMEGTEAVEPLGERILGRYTLEDVYDPITD
DLIVEANSLITEDLVEKIEGSGLDRVKVRSVLTCESEHGICRQCYGLDLATRRIVEVGEA
VGTIAAQSIGEPGTQLTMRTFHIGGAASSSAEQSSLNAKFGGTIRFDEMKTVPNREGYPV
VLNRNGSLQIIDKSERVLEKYNIAYGTKLLVKDGVTVKQGDLIAEWDPYVAVILTEYPGR
VAFGDIVEGETLKEEIDPITGLSQKVIIANTRGKKQPRVSVKGEDNKTIQRYILPIGALL
QVDEGDMIEPGDIVAKIPRETTKTKDITVGLPRVAELFEARRPKDPAVIAEIDGIVSIEN
TARGLRKLTIENEETGVKKTYSISVQRYINVHDGDKVKAGESLIDGLVNPHDILAVLGED
ALQRYIVDEIQEVYRKQGVAINDKHIETIVRQMLKKVVIEEPGDSEFMPNEEVYKSEFVA
EYQRLVATGLTPPAGKAILQGITKAALNTQSFFSAASFQETTRVLTDAACSGKMDELRGL
KENVIIGKLIPAGTGSKFIQSKKFKFINPVK
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagagtactctttttgacgaaaaagcacatgtgtttttcgactctatagcaata
cgcatagcaagccccgacaagatcagagcatggtcttccggtgaggttacaaagcccgaa
acaatcaactaccgtaccttcaaacccgaaagggacggtctgttctgcgctaaaatcttc
ggacccgtgaaagactgggaatgcctttgcggaaagtataagaggatgaagcacagaggc
attgtgtgcgaaaagtgcggcgttgaagtgatccagtccaaagtgagaagagaaagaatg
ggtcatatagaccttgcttcccctgtgtgccatatatggttcttcaaaggcactcccagc
aggataggctctcttcttgacttaagcatcaaagacatagaacgcattatctactttgag
tcatacatagtcaccaacccgaaggagactcctctcaaagagaaggaactccttacggaa
gaccactaccgcagggcggtggatgagtacggtcccaatgcctttgtagccaaaatcggc
gctgaagcactgaaagacctgcttaaacaggtggatctcgacattctcctccttgaactc
aaggaagatctgagagataccacaagtatgcagaaaaagctgaaacttgccaaaaggctc
agagttgttgaagctttcagaaaaagcggcaacagacccgagtggatggttctggacgta
gtccccgtgattccgcccgagcttcgtccccttgttccccttgacggcggaaggtttgcc
acgagcgaccttaacgacctctacagaagggtaatcaacaggaacaaccgtcttaaaaag
ctcatggagcttaacgcccctgaaatcatcatccgcaatgaaaaaagaatgcttcaggaa
gctgtggacgccctgtttgacaacggcaggagaggcagagtaatccgcagctccaacaag
cgccccctgaaatcactttccgacatgatcaaaggaaaacagggacgtttccgccagaac
cttctgggtaaaagggtggattattcaggacgaagcgttatcgttgccggtcctcacctt
aaaatgcaccagtgcggtatacctaagctcatggctcttgagcttttcaagcccttcctc
tactacaagcttgaaaaggaaaggggcattgcctccaccataaagcaggcgaaaagaatg
gtggaagagcagagaccggaagtatgggatgttctggaagaggtaatcagggaacaccct
gttctcctcaaccgtgcgcctactcttcacaggctcggtattcaggcatttgaacctcag
cttatagaagggaaagccattcagcttcaccccctcgtctgccccgccttcaatgcggat
ttcgacggtgaccagatggctgttcacgttcctctgtcatatgaggcgcagcttgaggcg
agaaccctcatgcttgcctgctacaacatactttctccggcgcacggaaagccccttgct
gttcccacgcaggatatggttctcggtatctactaccttaccagaggcgctaaaaacgcc
aaaggcgcgggcaaaatcttctcctctcccaaagaggtaaggatcgcatacgatcagggt
cagcttgatgttcacgccgagatcaaggtaagaataaacggcaaaaggtacgacaccgta
acaggaaggataatcctttttgaagttgtgcctgccggaatagactttgaagtggttaac
cagcttttcaccaaaaaagacctcgttaagcttgttgactacatatataaaaagctcggc
aactaccacacggtggagttccttgacaacctgaaggatctcggttttgcgcaggcgtgc
agagcgggcttctccatatgtcttgacgaccttataatacccgctgaaaaacctgagctt
atcaatcaggctatgcagaaggtgcgcgagatcgaagaacattaccgtgaaggtgcgctg
acttcgggcgagcgttacaaccagataatcgacgtttggtcaaccactaacgacaaagtc
actgacaagatgatgaaaaccatcgagaatcagggcggcgacaagtcgaaagaatataag
agagaccgattctacaacgccattcacgtaatggcgcactcaggagcgagaggttcaaaa
gcgcagataagccagcttgcgggcatgagaggactcatggcgaaaccctcaggcgagatt
atcgagacgcccatcacctcaaacttccgtgaaggacttacagttctccagtacttcata
tcgacccacggcgcgagaaaaggtcttgcggatacggctcttaaaacagcgaactccggt
taccttaccagaagacttgtggacgttgctcaggacgttatcatcagcgaagaggactgc
ggaacaatacgcggtatcgaaatatccgcccttatggaaggaaccgaagctgttgaacct
ctcggcgagcgtatcctcggacgctacactcttgaagatgtgtacgacccgattaccgat
gatctgattgttgaggcaaacagtcttataacagaagacttggttgaaaaaattgaaggc
tccggtcttgacagggttaaagtgcgttcggttctcacatgcgaatccgagcacggcata
tgccgtcagtgctatggtctggatcttgccacaagacgtattgtcgaagtgggagaggca
gtgggcacaatagcggcgcagtcaatcggtgaacccggtacgcagcttacgatgaggact
ttccacatcggtggtgcggcgtcttcatcagccgagcagtcaagccttaacgccaagttc
ggcggtacaatcaggtttgatgaaatgaaaaccgttccgaacagggaaggttatcctgta
gttcttaaccgtaacggctctcttcagattattgataaatcagaaagagtgcttgaaaaa
tacaacatcgcgtacggaaccaagctgcttgtgaaagacggcgtcacagttaaacagggc
gacctgatagccgagtgggatccttatgtagctgtaatccttacagagtaccccggacgt
gtcgctttcggcgatatagtcgaaggggaaacactgaaagaggagatcgaccccattacc
ggtctttcccagaaggttatcatcgccaacacaagaggcaagaaacagccccgtgtgtct
gttaaaggcgaggacaacaaaactattcagcgctacatcctccccataggagctctgctt
caggtggatgagggcgatatgatcgaacccggcgacatagtcgcgaaaatacccagagaa
accactaagacaaaagatattacagtgggtcttccgagggttgccgagctcttcgaggcg
agaagaccgaaagatcccgcagttattgcggagatcgacggtatagtgagtatagagaac
accgcgcgcggtcttcgtaaactcaccatcgaaaacgaagagacgggcgttaagaaaacc
tacagtatttctgtccagcgttacatcaacgttcacgacggtgacaaggttaaagccggc
gaatctctcatagacggtctcgtgaacccccacgacattctggcggttctcggcgaggac
gctctccagagatatatagtagacgagattcaggaagtttaccgtaagcagggtgttgcg
attaacgataaacatatcgagacaatcgtgcgccagatgctgaagaaagttgtgatagaa
gagcccggggattccgagtttatgcccaatgaagaggtttacaaatcagagttcgttgca
gaataccaaagactggtggcaacagggctcactcctccggcgggcaaggcgatacttcag
ggtatcaccaaggcggctctcaatacgcagagcttcttctccgcagcttcatttcaggag
acaacgcgtgtcctcaccgacgctgcatgctccggtaagatggacgagctcagagggctt
aaagagaacgttatcatcggtaagctgataccggcgggcactggctctaagttcatccag
agcaaaaaattcaaattcatcaacccagtaaaataa
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