Geovibrio thiophilus: EP073_06610
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Entry
EP073_06610 CDS
T05803
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
gtl
Geovibrio thiophilus
Pathway
gtl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP073_06610 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtl03019
]
EP073_06610 (pnp)
03016 Transfer RNA biogenesis [BR:
gtl03016
]
EP073_06610 (pnp)
Enzymes [BR:
gtl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EP073_06610 (pnp)
Messenger RNA biogenesis [BR:
gtl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EP073_06610 (pnp)
Transfer RNA biogenesis [BR:
gtl03016
]
Prokaryotic type
tRNA degradation factors
EP073_06610 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
QAR33086
UniProt:
A0A410JY03
LinkDB
All DBs
Position
1390234..1392333
Genome browser
AA seq
699 aa
AA seq
DB search
MDKKLDTVSVSLREDAEPIIFETGWKAKQANGSIWIRQGGTVILVTATGRKEASDSVDFF
PLTVNYVEKFYAVGKVPGGFLKRESRPSDKETLISRLIDRPLRPMFPDGFRNETQVIATV
VSYDGKHSPDVLAINASSAALLISDIPFSIPVAGVRVGKHNGQLIINPSYEIFNELTMNI
VVAGSDDAINMVEAGMEMVTEDEVVEALQFAHDNIKTLVQTQKELAEKCGKAKFEYKDFS
VPAAVLEETEKELKEKINAALIIPGKLEKYAALDRVRDEYFEAVEARLGEEYSDKKGFYK
EVWHNVEKKVFRDFSLDSGKRIDGRTAEDVRPIDIETHLLPMPHGSALFTRGETQALAVA
TLGTKTDTQMLDNIEGESKKRFMLHYNFPPFCVGEVGFLRGPGRREIGHGALAERALLSI
LPDEADFPYSLRIVSEVLESNGSSSMATVCGGCLSLMDAGVPVKGVVAGVAMGLIKEGDR
YIILSDIMGTEDHLGDMDFKVAGTENGITALQMDIKIEGLSRKLLEEALAQAKRSRLHIL
GKMKEALPTYREELAETAPRYQTLRINPEKIGLLIGPGGKNIKAIVEDTGAQIDIDDSGQ
VNVFAVSKEAIEAAIARINGTVQEVELDKIYQGKVKKIMDYGAFVEIIPGVEALLHVSQY
SNERINSIADVLKLGDVVEVKYLGKDQNGRHKISRKVLL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaactcgataccgtatcggtaagcttgcgtgaagatgcggaacccataata
ttcgaaacgggctggaaagcaaagcaggcaaacggaagtatctggatacgtcagggcggt
acagttattcttgttaccgcaaccggaagaaaagaagcttcagacagtgtggacttcttt
cctcttactgtaaactacgtggaaaaattctacgcagtaggcaaggttcccggcggcttc
ctcaaaagggaaagcagaccgtccgacaaggaaacccttatttcaagactcattgacaga
cctcttcgtcccatgtttcccgacggattcagaaacgagactcaggtcattgccactgtt
gtatcctatgatggtaagcactctccggatgttcttgccataaacgcttcaagtgccgcg
ctgctcatttcggacattcccttcagcattcctgttgcgggtgtcagggtcggcaaacat
aacggacagcttataatcaacccctcttacgaaatattcaatgaactcactatgaatatt
gtcgttgcaggttcggatgatgccatcaacatggtggaagccggaatggaaatggttacc
gaggatgaggttgtcgaggcactccagtttgcccatgataatataaaaactcttgttcag
actcagaaagaactggctgaaaaatgcggaaaggcgaaatttgagtacaaggatttctct
gttcccgcggctgttctggaagaaaccgaaaaagaacttaaagaaaaaatcaacgccgct
cttattatccccggcaagcttgaaaaatacgcagcccttgacagagtcagggacgagtac
tttgaagctgtcgaggcaaggctcggcgaagaatattccgataaaaaaggcttttataag
gaagtatggcacaatgttgagaaaaaagtcttccgtgacttctctcttgacagcggaaag
agaatcgacggacgtacggcggaagatgtccgccccatcgacatagaaactcaccttctt
cccatgccccacggttccgccctcttcaccagaggcgaaactcaggcgcttgccgttgcc
actctcggtacaaaaaccgatacgcagatgctggacaacattgaaggcgaatccaaaaaa
cgcttcatgcttcattacaactttccccctttctgcgtgggtgaagtcggtttcctcaga
ggtcccggcagaagagagataggtcacggcgcacttgctgaaagagcgcttctgtcgata
cttcccgatgaagcggatttcccttattctctgagaattgtttccgaagttcttgagtca
aacggttcgtcctcaatggcgacagtttgcggcggatgcctcagccttatggatgccggc
gttcctgtgaagggtgtcgtagcgggcgttgctatgggtcttattaaagaaggcgacaga
tacataattctcagcgacattatgggaaccgaagatcacctcggcgacatggactttaaa
gttgccggaaccgaaaacggcatcaccgctcttcagatggatattaagattgaaggtctt
tcaagaaagcttcttgaggaagcacttgcacaagctaagagatcaaggctgcatattctc
ggcaaaatgaaagaagctctccccacatacagagaagagctcgccgaaactgcgcccaga
taccagaccctcagaattaaccccgagaagatcggtctgctcatcggacccggcggaaag
aacataaaagcgatagttgaagataccggcgctcagatcgacattgacgattcgggacag
gtaaacgtatttgccgtgagcaaagaagccatcgaagctgccatagccagaatcaacggt
acggttcaggaagtggagcttgataagatctatcagggcaaagttaagaagataatggac
tacggcgctttcgtggagataatccccggcgttgaagccctgcttcacgtttcccagtac
agcaatgagcgtatcaacagcattgccgatgttctcaaactcggagatgtggttgaagtg
aaatacctcggcaaagaccagaacggcagacacaaaatctccagaaaggtgctgctgtaa
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