Geovibrio thiophilus: EP073_12280
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Entry
EP073_12280 CDS
T05803
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
gtl
Geovibrio thiophilus
Pathway
gtl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EP073_12280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtl03019
]
EP073_12280
Enzymes [BR:
gtl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EP073_12280
Messenger RNA biogenesis [BR:
gtl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EP073_12280
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QAR34153
UniProt:
A0A3R5Z0P2
LinkDB
All DBs
Position
complement(2653157..2654725)
Genome browser
AA seq
522 aa
AA seq
DB search
MLRRLKQKIRSLFGTKKAAAIRVREITPDTKKEVQQHRKPEVHHKAAVKPTREKVRTAPP
KEKIRAVQAPPRPKKEPKVFEPWDPAVFNVEPAEGKTRFQDLDISEQLLRAVYDLGFQYC
TDIQAEILPKAFEDRDVSGKAQTGTGKTAAFLLSALRHIQRNPLENRKTGSPRVLILAPT
RELVLQIEKDALGLSKYTDTEVLAVFGGMGYEKQKRALEEKLVDIVVATPGRLLDFRQNS
KVNLSAVEILIIDEADRMLDMGFIPDIRRIINYLPQKESRQTMLFSATLTPVVAELASRW
TKEPFTVEIEPENVTNIRIEQLAYIIESDDKFKVLYNYIRHNDLKSVIIFCNRRDQTRNL
TDKLYSLGIECRMLSGDVSQTKRISTLEEFRTGTIQVLVATDVAARGIHVDGVTHVFNYN
LPEEPDSYVHRIGRTARAGASGISVIFACEEEAMLIPALEEHTGVKMNYIYPDEELLAEL
PAQVRKPEKKERPVIKTSGRAGARPMKPGGRKPRRKTGDTKA
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
ttgctaagacgtttaaaacagaaaatccgctcccttttcggaacaaaaaaggcagcggcg
atccgtgtgagagagatcacaccggatacgaaaaaagaagtgcagcagcaccgtaagccc
gaagtgcatcacaaggctgctgtaaagccgacaagggagaaggtgagaactgcgcctcct
aaggaaaaaatcagagctgttcaggctccgcccagaccgaaaaaagaacccaaggttttt
gaaccgtgggatcctgcggtttttaatgttgagcccgcagaaggaaaaacaagatttcag
gatcttgatatttccgaacaacttctgagagcagtgtatgatctcggttttcagtactgc
accgatattcaggcagagatactccccaaggcatttgaggatagggatgtaagcggaaaa
gcacagacaggaaccggcaaaacggcggcattccttctttccgctctcaggcatattcag
cgcaatccgctggaaaaccgcaagaccggcagccccagagtgcttatactcgctccgaca
agagagcttgtgctccagatagaaaaggatgccctcggactctctaagtatactgataca
gaggtgctggcggtattcggcggcatgggctatgagaagcagaagagagcccttgaggaa
aaacttgtcgatatagtggtggctacgcccggcaggctccttgactttcgccagaacagc
aaggtaaacctttctgctgtggagattctcatcatcgatgaggcggacagaatgcttgac
atgggcttcatccccgacatcagaaggataatcaactatctgccccagaaagagagcagg
cagacgatgcttttcagcgccactctgacccctgttgttgcggagcttgcgtccagatgg
accaaggaaccattcacggtggagatagagcccgaaaacgtaaccaacatcaggatcgag
cagctcgcctacataatcgagagtgacgataagttcaaggtgctttacaactatatcaga
cacaacgatctcaagagcgtgatcatcttctgcaacagaagagaccagacccgcaatctc
accgacaagctttactcacttgggatagagtgcagaatgctctccggcgatgtaagccag
accaaaaggatcagcactcttgaggagttcaggacaggaacgattcaggttctcgttgcg
acagacgtggcggcgcggggtatacacgttgacggcgttacccatgttttcaactataac
ctgcccgaagaaccggacagctatgtccacagaataggacgtacggcgagagccggagca
tccggaatatcggtgattttcgcatgtgaagaggaagcaatgctgattcccgctctggaa
gagcacacaggcgttaagatgaactacatataccccgatgaagagcttctggcggaactg
cctgcgcaggtgaggaagcctgagaaaaaagaaagaccggtgataaaaacttccggcagg
gcaggggcaagacccatgaaacccggcggaagaaaaccccgaagaaaaacgggggatact
aaagcttaa
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