Geobacillus thermocatenulatus: GT3921_00280
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Entry
GT3921_00280 CDS
T05178
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gtm
Geobacillus thermocatenulatus
Pathway
gtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT3921_00280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtm03019
]
GT3921_00280
03009 Ribosome biogenesis [BR:
gtm03009
]
GT3921_00280
Enzymes [BR:
gtm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GT3921_00280
Messenger RNA biogenesis [BR:
gtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GT3921_00280
Ribosome biogenesis [BR:
gtm03009
]
Prokaryotic type
rRNA helicases
GT3921_00280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ASS97653
UniProt:
A0A226Q613
LinkDB
All DBs
Position
complement(52150..53553)
Genome browser
AA seq
467 aa
AA seq
DB search
MTTFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPI
VEKVDVKNGAIQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKH
PHVIVGTPGRIIDHINRGTLRLDHVHTVVLDEADEMLNMGFIEDIEAILSHVPVKRQTLL
FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHHIERTTK
RKMERMKPPTLDEALEGQQRIAIEKLLNVVETENLSFYKRAAEELLEEHDSVTIVAACLK
MLTREPDTTPVQLTEEPPLAVKREKKRGGRPDGSARSRTKKRRITAH
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgacgacatttcaagaattaggattaagccaagaagtgatgaaagcgatcgagcggatg
gggtttgaagagacgactccgattcaagcgaagacgattccgctcagtctgcaaaataaa
gacgtaatcggtcaagcgcaaaccggaacggggaaaacggcggcgtttggcattccaatc
gtagaaaaagtggatgtgaaaaacggcgccattcaggcgcttgtggtcgcgccgacgcgt
gagctcgccattcaagtatcagaagagctgtacaaaatcggcgccgtcaagcgcgtgcgc
gtcttgccgatttacggcggccaagatatcgagcggcaaatccgcgctttgaaaaaacat
ccgcacgtgatcgtcggcacgcctggccgcattatcgaccatattaaccgtgggacgctc
cgccttgaccatgtgcatacggttgtgctcgatgaggcggatgaaatgctcaatatgggc
tttatcgaagatattgaggcgattttaagccatgtgccggtcaagcggcagacgttgctg
ttctcggcgacgatgcccgatccgattcgccgcatcgccgagcggttcatgaatgagccg
gagcttgttaaggtcaaggcaaaggagatgaccgtgccgaatatccaacaatattatttg
gaagtgcatgagaaaaagaaatttgacattttgacgcggctccttgatattcaggcgccg
gagctcgcgatcgtgttcggccgcacgaagcgtcgtgtcgacgagctggcggaggcgctc
aacttgcgcggctatgcagcggaaggcattcacggcgatttaagccaagcgaaacggctg
tcggtgttgcgcaagtttaaggaaggtgcgattgaaattttagtggcgacggatgttgcg
gcgcgcggcttggatatttctggcgtaacgcacgtgtacaactttgatattccgcaagac
ccggaaagctatgtccaccggattgggcgcaccggccgcgccgggaaaacgggtgtggcg
atgacgtttgtcactccaagggagatcggccagcttcaccatattgagcggacgacgaag
cggaaaatggagcggatgaagccgccgacacttgatgaggcgctcgaaggccaacagcgt
atcgcgatcgaaaagcttctcaacgtcgtggagaccgaaaacctgtcattttacaaacgg
gcggcggaagaattgcttgaagagcatgattcggtgacgattgtcgccgcctgcttgaaa
atgttgacacgcgagccagatacaacgccggtgcaattgacggaagagccgcctttagcg
gtcaagcgggagaaaaaacggggcggccgcccggacggctcagcccgcagccggacgaaa
aaacggcggattacggcgcattaa
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