Geobacillus thermocatenulatus: GT3921_02050
Help
Entry
GT3921_02050 CDS
T05178
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
gtm
Geobacillus thermocatenulatus
Pathway
gtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT3921_02050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtm03021
]
GT3921_02050
03019 Messenger RNA biogenesis [BR:
gtm03019
]
GT3921_02050
Transcription machinery [BR:
gtm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
GT3921_02050
Messenger RNA biogenesis [BR:
gtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GT3921_02050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ASS97944
LinkDB
All DBs
Position
397167..398441
Genome browser
AA seq
424 aa
AA seq
DB search
MELTLAALENMKLKELYELARQYKISYYSKLTKKELIFAILKARAEQDGLFFMEGILEII
PSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLHVEAV
NGEDPEVAKERVHFPALTPLYPNRQMKLETTPDKLSTRIIDLIAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPDVELIVLLIDERPEEVTDIERSVQGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIPKEHLEKLWAIRKTMADSPDFIERFLNKLRRTKSNEEFFALLDQEWKQGG
PLRL
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaattaacgttagcagcattagaaaacatgaaattgaaggagctgtatgagctcgcc
aggcaatacaaaatttcatactacagcaagttgacgaaaaaggagcttatttttgcgatt
ttgaaagcgcgtgccgaacaagacggcctctttttcatggaaggcatcctcgaaatcatt
ccgtcggaaggattcggctttttgcgcccgatcaactattccccgagctcggaagacatt
tacatttccgcttcccaaatccgccgttttgatttgcgcaacggggataaagtgtccggc
aaagtgcggccgccgaaagagaatgaacgctacttcggcttgcttcatgtcgaagcggtc
aacggcgaagacccagaagtcgccaaggagcgcgttcactttcctgcgttgacgccgctt
tatccgaatcggcaaatgaagctggagacaacgccggacaagctgtcgacccgcatcatc
gacttgatcgctcccgtcggctttggccagcgcgggttgatcgtcgcgccgccgaaagct
ggcaagacgatgctgctgaaggaaattgccaacagcatcaccacaaaccacccggatgtc
gagttgatcgtcttgctcattgacgaacggccggaagaagtgaccgacatcgagcggtcg
gtgcaaggcgatgtcgtcagctcgacgtttgatgaggtgccggaaaaccatattaaagtg
gctgagcttgtcttagaacgggcgatgcgattagttgagcataagcgtgacgtcgtcatt
ttaatggacagcatcacccgcctcgctcgagcgtacaacttagtcattccgccgagcgga
cgcacgctctcgggcgggatcgacccagcggcgtttcatcgcccgaagcggtttttcggt
gcggcgcgcaacatcgaagagggcggcagcttgacgattttggcgaccgccctcattgac
accgggtcgcgcatggatgacgtcatttacgaggaatttaaaggcaccggcaacatggag
ctccatcttgaccgctcgctcgccgagcgccgcatttttccagcgattgacattcgtcgt
tcgggaacgcgcaaagaggagctgctcatcccgaaagaacatttggaaaagctgtgggcg
atccgcaaaaccatggccgattcgcccgactttatcgagcggtttttgaacaaattgcgc
cggacaaagtcaaacgaagagtttttcgccttgctcgatcaagagtggaaacagggcggc
ccgctccgtctgtag
DBGET
integrated database retrieval system
