Geobacillus thermocatenulatus: GT3921_05710
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Entry
GT3921_05710 CDS
T05178
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
gtm
Geobacillus thermocatenulatus
Pathway
gtm03030
DNA replication
gtm03430
Mismatch repair
gtm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GT3921_05710 (dnaE)
03430 Mismatch repair
GT3921_05710 (dnaE)
03440 Homologous recombination
GT3921_05710 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gtm03032
]
GT3921_05710 (dnaE)
03400 DNA repair and recombination proteins [BR:
gtm03400
]
GT3921_05710 (dnaE)
Enzymes [BR:
gtm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GT3921_05710 (dnaE)
DNA replication proteins [BR:
gtm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GT3921_05710 (dnaE)
DNA repair and recombination proteins [BR:
gtm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GT3921_05710 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
ASS98576
LinkDB
All DBs
Position
1148018..1151293
Genome browser
AA seq
1091 aa
AA seq
DB search
MMFVHLHVLSGYSLFQSAAAVEALAARAKQLGYQALALTDRNVLYGAIPFYRECKQNGIR
PIIGMTADVALSGEEAFPLVLLAANEEGYRHLLEISTMMQMGETKHMEEDALVRLSGGII
AITPGSEGRVESLVAAGEWERAKEALGRYHQLFPGRLYVAVQRGEQTRAPYEAGLLQLAE
ETGVPIVATNDVRYVERSDAVAWRCLQAIGRGALLADIEDDNGRYLAGPEEMARRFADLP
EALENSLAIAHQCELQIEFGGWRLPAYPVPDGETADRYLRRLSEQGLVRRVPSADERYWR
RLAHELDVIQSLHFSDYFLIVADVLAYARRRSILTGPGRGSAAGSLVAYALSITDVDPIK
YGLLFERFLNPERASVPDIDLDFPDDRREEVIRYVADKYGRDRVAQIITFGTFGAKAALR
ETAKALGVPGREAEQVVVLLPSKQSVTLRQWHAESAAFRRAVAAVPQGREWLDVAQKLEG
LPRHTSIHAAGVIISPEPLVRFVPLQPSHGEWPLTQYAMGALEALGLLKMDFLGLRTLTL
IEQIVRLIERQTGKPFDVRMLPLDDEKTYALLGAGDTNGIFQLESSGMKRVLAELRPTEF
EDVVAVNALYRPGPMQMIPVYIRRKRGEEPIEYIHPDLAPILAPTYGVLIYQEQIMQIAA
RLAGFSLGQADVLRRAVAKKEKALLAKQRQTFVAGCVANGYPKAVAEELYRHIVRFADYG
FNRSHAVSYALLSYAMAYMKAHYPLCFYAVMLTNASGDREKAAVYYWEAARKGINVLLPS
VNKSGFRSFVEGSAIRLGLAMVKQVGSAAKLIVEERKANGPFADFFDFAARLLPKGLGRP
ALEALISVGAFDEFGADRASLLASIDIAIEHAQWVQALQAGGLSLKPKYAAAHSWPLSER
RRREAEFLGFAVTPHPAAVCRPLLQAAGAVYAADVHGSSTVVGGAVVRIRKTRTKQGEEM
AFFTVGDESGELEAVAFPNVYRRAAGVLKEGQFVLLAGTIEMRGGRRQLIIRRAERLGAS
ALYIDASRQDKARLAALKPLLERHQGHTPVYLYDEANRKLLRLPERYAADLTAPLIDELL
SLFGSGRVAVK
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcgtccacttgcatgtgttgagcggatacagtttgtttcaaagtgcggcggcg
gtggaggcgcttgcagcgagggcgaaacagctcggctatcaagcgctcgcgctcacggac
cggaatgtgttgtatggcgctattccgttttaccgggaatgcaagcagaacggcattcgc
ccgattatcggcatgacggctgatgtcgctctttctggggaagaagcgttcccgctcgtg
ctgttggccgccaatgaagaggggtatcgccatttgcttgaaatcagcaccatgatgcaa
atgggggaaacaaagcatatggaggaagacgctcttgtgcgcttaagcggcggcatcatc
gccatcactcccggaagcgagggacgggtcgaatcgcttgtggctgccggcgaatgggag
cgggcgaaagaggcgcttggccgctatcatcagctgtttccgggacggctgtatgtcgcc
gttcagcgcggcgagcaaacgcgagccccatatgaagccgggttgttgcagctggcggag
gaaaccggcgtcccgatcgtggcgacgaacgacgtccgttacgtggagcgcagcgatgcc
gtggcgtggcgttgcttgcaggccatcggccgcggcgcgctgcttgcggacattgaggac
gataacggccgctatttggcagggccagaggagatggcgcgccggtttgcggacttgccg
gaggcgctcgagaacagcctggcgatcgcccatcaatgcgagctgcagatcgagtttggc
ggctggcggctgccggcgtatcctgttccggacggagagacggccgaccgttatttgcgc
cgcttatcggaacaagggctcgtccgacgcgtgccgtcggccgatgagcgctactggcgt
cggcttgcgcatgagctggatgtgattcagtcgcttcatttcagcgactattttttgatc
gtcgccgatgtgctcgcctacgcccgccggcgcagcatcttaaccggcccgggccgcggt
tcggcggccgggtcgcttgtcgcctacgcattgtcgatcaccgatgtcgatccgatcaag
tatgggcttttgtttgaacggtttttaaatccggagcgggcgtcggtgccggatattgac
ttggattttcctgatgaccggcgcgaagaagtgattcgctatgtggcggataaatacggg
cgcgaccgcgttgcgcaaatcattacgttcggcacgttcggcgccaaagcggcgctgcgc
gagacggccaaagcgcttggcgtccctgggcgggaggcggaacaggtcgtggtgctcttg
ccgagcaaacaaagtgtgacgctccgccaatggcatgccgagtccgccgcttttcggcgc
gcggtggcagcggttccgcaagggagagagtggctggatgttgcccaaaaactggaaggg
ctgccgcgccatacgtcgatccacgctgctggtgtcatcatcagcccggagccgctcgtt
cgcttcgtgccgctgcagcccagccatggcgaatggccgctgacgcaatacgcgatgggg
gcgcttgaagcgcttggattgctgaaaatggattttctcggtttgcgcacgctcacgttg
atcgagcagatcgtgcgcttgatcgagcggcagacaggaaagccgtttgacgtccgcatg
ctgccgcttgatgatgaaaaaacgtacgcgctgcttggcgctggagatacaaacggcatt
tttcagctggaatcaagcgggatgaagcgcgtgctcgccgagctgcggccgaccgagttt
gaagatgtcgtcgccgtcaatgcgttatatcggccgggtccgatgcaaatgatccccgtt
tacatccggcgcaagcgcggcgaggagccgattgaatacatccatcctgaccttgcgccg
attttagcgccgacatacggggtattgatctatcaagagcaaattatgcaaatcgccgcc
cggcttgccggattttcgctcggacaagcggacgtgcttcgccgggcggtggcgaaaaaa
gaaaaagcgctgcttgccaagcagcgtcagacgtttgtcgccggctgcgtggcgaacggc
tatccgaaagcagtcgccgaggaactgtaccgacacatcgtccgctttgccgattacggc
ttcaaccgcagccacgcggtcagctatgcgctgttgtcgtatgcgatggcgtatatgaaa
gctcattacccgctttgtttttatgcggtcatgctcaccaatgcctccggcgaccgagaa
aaagcggcggtgtactattgggaggcggcgcgaaaagggatcaacgtccttttgccgtcg
gtgaacaaaagcggttttcgctcttttgtggaggggagcgccattcgccttgggctcgcg
atggtgaagcaagtcggctcggcggcgaagctgattgtcgaggagcggaaagcgaacgga
ccgtttgccgacttctttgatttcgctgctcgcttgctgccaaaagggctcgggcgcccg
gcgctcgaggcgctcatttccgttggggcgtttgacgagttcggtgcagatcgggcttcg
cttcttgccagcattgacattgcgatcgaacatgcgcaatgggttcaggcgctgcaagcc
ggagggctgtcgttaaaaccgaaatatgctgccgcacattcgtggcctttgtccgaacgg
cggcggcgggaagcggagtttcttggcttcgccgtcaccccgcatccggcggcggtgtgc
cgcccgttgctgcaagcggcgggggcggtgtatgctgctgatgtacatggatcgtcaact
gtggtcgggggagcggtcgtccgcatacggaaaacgaggacaaagcagggagaagaaatg
gcgtttttcaccgtcggcgatgagagcggggaattggaggcggtggcgtttccaaacgtt
taccgccgcgcggcgggcgtattgaaggaagggcagtttgtattgcttgccggaacgatt
gagatgcgcggcggacggcgccagctcatcatacgccgagccgaacgattgggggcgtcg
gcgctgtatatcgacgccagccgccaagacaaggcgcgtcttgccgcgctgaagccgctg
ttggaacgacaccaaggccatactccggtgtatttgtacgatgaagcgaatcggaagctt
ctccgtcttcccgagcggtatgcggccgatctcaccgcgccgcttatcgatgaattgctt
tccttgttcggctctggtcgcgtagccgtcaagtaa
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