Geobacillus thermocatenulatus: GT3921_14220
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Entry
GT3921_14220 CDS
T05178
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gtm
Geobacillus thermocatenulatus
Pathway
gtm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GT3921_14220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtm03019
]
GT3921_14220
Messenger RNA biogenesis [BR:
gtm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GT3921_14220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AST00091
UniProt:
A0A226Q2A9
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All DBs
Position
2900322..2901989
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AA seq
555 aa
AA seq
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MKLLADQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
VKHADKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLMSDSTNSEIPHFTMSERRVGESIHDIFRKVEGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGISDKEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQVLISKHLEKVLERKTNQWSEIKNEITETLAPFLYE
RTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgttagctgaccagcaagttggcgtttttgccctcggcggactgggtgaaatc
ggaaaaaatacatacggcgtacaattccaagacgaaatcattgtcattgatgcaggcatt
aagtttccggaagatgagctgcttgggatcgactatgtcattccagactactcctattta
gtgaagcacgcggacaaagtgaaagggctgttcatcacccacgggcacgaagaccatatc
ggcggcattccgtatttgctccggcaggtgaacatcccgatttacggcggcaaattggcg
cttggactgattcggaataaacttgaagaacatggcttgttgcgccaagcgaaactcatt
gagattcgcgaagacgatgtcatccgctttcaaaaaacggccgtcacctttttccggacg
acgcacagcatcccagacagctacggtattgttgtgaaaacgccagtcgggcaaatcgtt
cacactggggattttaaattcgactttacgccggtcggtgagccagccaatttgacaaaa
atggccgagattgggaaagaaggcgttctttgcctcatgtcggacagcacgaacagcgag
attccacattttacgatgtcggagcgacgcgtcggcgaaagcattcatgacattttccgc
aaggtggaaggacgcatcattttcgccacatttgcatccaacatccaccgtcttcaacag
gtgacggaagcagccgtcgccaataaccgaaaaatcgctgtcttcggccgaagcatggaa
gcggcgattgagatcggacaagacctcggctatatcaaatgcccgaaaggcacgttcgtc
gacgcgaacgaaatcaaccgcctgccggccaaccgggtgacgattttatgcaccggcagc
caaggggagccgatggccgccttgtcacgcatcgccaacggcacgcaccggcaaattcaa
atcattccgggcgacacggtcgtcttttcctcatccccgatcccgggcaacacggtgagc
gtcaaccgtacgatcaacatgctgtaccgcgctggtgcagaagtcatccacggtccgctc
aacgacatccatacgtctggccacggcggacaagaagagcaaaaattgatgatccggctg
atgaagccgaaatatttcatgcccatccacggcgaataccgcatgcaaaaaatgcacgcc
aagctcgccattgactgcggcgtgccggaggaaaactgctttattatggacaacggcgaa
gtgcttggcatcagcgacaaagaagcgcgcatcgtcggcaagatcccgtccggctccgtc
tacatcgacggcagcggtgtcggcgacatcggcaacatcgtcttgcgcgaccgccgcatt
ttgtctgaggaaggactcgtgattgtcgtcgtcagcatcaacatgaaagaatttaaaatc
gccgccggtcctgatattatctctcgcggcttcgtctatatgcgggagtcaggcgacttg
atcagcgaagcgcaggtgttgatctccaagcatctcgaaaaagtgctggaacggaaaaca
aaccaatggtcggagatcaaaaacgaaattacggaaacgctcgctccgttcttgtacgag
cggacgaaacggcggccgatgattttgccgatcatcatggaaatctaa
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