Geobacillus thermodenitrificans: GTNG_0048
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Entry
GTNG_0048 CDS
T00496
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
gtn
Geobacillus thermodenitrificans
Pathway
gtn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gtn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GTNG_0048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gtn03400
]
GTNG_0048
Enzymes [BR:
gtn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GTNG_0048
DNA repair and recombination proteins [BR:
gtn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GTNG_0048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ABO65435
UniProt:
A4IJD1
LinkDB
All DBs
Position
57105..60638
Genome browser
AA seq
1177 aa
AA seq
DB search
MLSLHRYLAENQDVRTIIEGIHVRLKEQLVAGLSGSARSVFISTLYKETGRPMLVVAHNL
FQAQKIYDDLVSLLGPDDVFLYSVNEVIAAEMAVASPELKAQRLEIMNHWAQEGKGVVVC
PVAGLRRLLPPLSLWKHYLFTFSVGQELDLERYKQLFVEMGYKRVATVSAPGEFSIRGGI
VDIYPLTAELPYRIELFDTEIESIRTFTPDDQRSHEQVDRVMIGPADEIILNEEARQRGI
ERIEAGLAASLENIKDDAAKQRMYEHIHAELEQLREGQEIEQQYKYMSLFYEKAASLLDY
LPEDGVLLMDEMSRLQEAAERLDREEAEWYTSLLDGGKMIHDVPISHSFSELLQKSRFQR
VYLSLFLRHAPHTHPQNVVNITCKQMQNFHGQMALLQSEIERWKKANYAVVFLAPDAERV
KKLQSLLEDYEIDALPLPHEAALLHGKCQLLQGDLNTGFELPLQKLAVITEEELFKKRAK
RPVRRQKLSNAERIKSYAELQVGDYVVHVNHGIGKYLGIETLEINGVHKDYIHIQYQGGD
TLYVPVDQMDQVQKYVGSEGKEPKIYKLGGTEWKKVKKKVESSVQDIAEDLIKLYAEREA
SKGYAFSQDTEMQREFEAAFPYQETEDQLRSIEEIKRDMESEKPMDRLLCGDVGYGKTEV
ALRAAFKAIMDGKQVAFLVPTTILAQQHYETVRERFQGFPINVGVLNRFRTRKQQAETIK
GLKDGTIDMVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVAHKEKIKQLKANIDVLTLTAT
PIPRTLHMSMIGVRDLSIIETPPENRFPVQTYVMEYTPELVKEAIERELARDGQVFFLYN
HIEDIDLRAEEIAQLVPEARVTFAHGRMSEAELESTILAFLEGQYDVLVTTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLNETAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNILGAEQHGFIDSVGFDLYSQMLKEAIEKRRGLKQEEERPD
VVIDVEVDAYIPDTYISDGLQKIEMYKRFKAVETLEDVEMLREEMADRFGDYPDEVAYLF
QIAEIKALAKQLGVESIKQHKQQIDLLFTEQASKTVEIQRLSGIGRQYGRLFGFGMDGAK
LKIVLYIKQMKPHEWLMILYETLKQLFGVENEKSVIA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
gtgctttctctgcatcgctatttagctgaaaatcaggatgttcgcacgatcattgaagga
atccatgtccgcctgaaagaacagcttgtcgccgggctgtcagggtcggctcggtctgtt
tttatttccaccctttataaggagacagggcggccgatgttagtggtggcccataacttg
tttcaggcgcaaaaaatatatgacgatctcgtttcgttgttggggccggatgatgtgttt
ctttattcggtcaacgaagtcatcgccgctgaaatggcggtcgccagtccggagttgaag
gcacaacgtctcgaaattatgaatcattgggcgcaagaaggaaaaggggttgttgtctgt
ccagtcgccggcttgcggcgattgctgccgccgctgtcgctttggaagcattacttgttt
acgttctcggttggacaagagctcgatttggaacgctataagcagctgtttgtcgaaatg
ggatacaagcgggtcgccaccgtttctgctcccggggagttcagcatccgtggcggcatc
gttgacatttatccgctaacggctgagcttccgtatcgtattgagctgtttgatacagaa
attgaatcgattcgaacgttcacccctgatgaccagcgttcacacgagcaggtggaccgc
gtcatgatcgggccggccgacgaaattattcttaatgaggaggcacggcagcgaggaatc
gaacgaatcgaagccgggcttgcagctagtttggaaaacatcaaagatgatgctgccaag
cagcggatgtacgagcatatccacgctgaattggaacagctgcgcgagggacaggaaatc
gaacaacaatataaatatatgtctcttttttatgaaaaggctgcgagtttactagattat
ttgccagaagatggcgtgctgctgatggatgaaatgagccggttgcaggaggcggctgag
cgacttgatcgcgaagaagcggaatggtatacaagcttactcgacggcggaaaaatgatc
catgatgtgccgatttcgcactcattttctgaattgttgcaaaagagtcgattccaacgg
gtgtacttgtccttatttttacgtcatgcacctcatactcatccgcaaaatgtcgtcaat
attacatgtaagcaaatgcaaaactttcatgggcaaatggctcttcttcagtctgagatc
gagcgatggaaaaaggcgaactatgcggtcgtctttttggcgccggatgccgagcgggtg
aaaaagttgcagtcgctgcttgaagattacgagatcgatgcgctgccgctgccgcacgaa
gcggcgttgttgcacggcaaatgtcagctccttcaaggcgatttaaatacagggtttgag
ctgccactgcaaaaactggcggtcatcaccgaggaagaactgttcaaaaagcgggccaaa
cgcccagtgcgccgacaaaagttgtcgaatgccgagcggatcaaaagctatgccgaactg
caagtcggcgactatgttgtccatgtcaaccacggtatcggaaaatatttaggcatcgag
acgttagaaatcaacggagtgcataaagactatattcatatccaatatcaaggcggcgat
acgctttacgtcccggttgatcaaatggaccaagtgcaaaagtacgtcggttcggaagga
aaagagccgaaaatttataagctcggcggtacagaatggaaaaaagtcaaaaagaaagtg
gagtcttctgtccaagacattgcggaagatttaatcaagttatatgccgagcgcgaggca
agcaaaggatatgcattttcccaggatacagaaatgcaacgcgaatttgaagcggcgttt
ccgtaccaagagacggaagaccagcttcgttcgatcgaggaaattaagcgtgatatggaa
agcgaaaagccgatggaccgcctcctttgtggcgacgtcggttacgggaaaacggaagtg
gcgctgcgggcggcatttaaagcgattatggacggcaaacaagtggccttccttgtgccg
acgacgattttagcccagcaacattatgaaacggtgcgtgagcggttccaaggatttccg
attaacgtcggggtgttaaaccggtttcggacgagaaaacagcaggcggagacgatcaaa
gggttaaaagacggcacaatcgacatggtgatcggtacgcaccggctgttgtcgaaggac
gtgaagtttaaagatttaggcttgctcattattgacgaggagcagcggtttggcgtggcg
cataaagaaaaaattaagcagctgaaggcgaatatcgacgtgcttacattaacagcaacg
ccgatcccgcgtacgctccatatgtcgatgatcggtgtacgcgatttgtcgatcatcgag
acgccgccggaaaaccgttttccggtacagacgtatgtaatggaatatacaccagagctt
gttaaagaggcgattgagcgcgagctcgcccgcgatgggcaagtatttttcctttataac
catatcgaagatatcgacttgagagcagaagaaatcgcccagcttgtcccggaagcgcgc
gtgacgtttgcgcacgggcgaatgtcggaggctgagctcgaatcgacgattttagccttt
ttggaagggcaatatgacgtgttggtgacaacgacgattattgagacaggcgtcgatatt
ccgaacgtcaatacgctcatcgtgtatgacgccgaccggatggggctgtcgcagctgtac
cagctgcgtgggcgcgtcggccgctcgaaccgcgtcgcttatgcatatttcacgtaccga
aaagacaaggtgttgaatgaaacggcagaaaaacggttgcaagctattaaagagttcacc
gagcttggttccgggtttaaaatcgccatgcgcgatttgtcgatccgcggtgccggcaac
attctcggcgcggaacagcacggctttatcgattcggtcggatttgatttatactcacaa
atgctgaaagaagcaattgaaaaacggcgtggccttaaacaggaagaggagcgcccggac
gttgtgatcgacgtagaagttgatgcctatattccggatacgtacatttccgatggatta
caaaaaattgaaatgtacaagcggtttaaagctgtcgagacactcgaggacgttgagatg
ctacgtgaggagatggcggatcgtttcggcgattatccggacgaggtggcttatttgttt
caaattgcggaaattaaagcgttggcgaagcagctcggcgttgaatcaattaagcagcat
aagcaacaaatcgatcttttatttaccgagcaggcgtcgaaaacagtggaaatccagcgc
ttatctggcattggccgccagtatggccgcctgtttggattcggcatggatggggcgaag
ctgaaaatcgttctttatattaaacaaatgaagccacacgaatggctgatgattttgtat
gagacgttaaagcagctgttcggggtggaaaacgaaaaatcagtgatcgcatga
DBGET
integrated database retrieval system
