Geobacillus thermodenitrificans: GTNG_0917
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Entry
GTNG_0917 CDS
T00496
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
gtn
Geobacillus thermodenitrificans
Pathway
gtn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTNG_0917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtn03019
]
GTNG_0917
Messenger RNA biogenesis [BR:
gtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GTNG_0917
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
HVO_0513_N
Motif
Other DBs
NCBI-ProteinID:
ABO66295
UniProt:
A4ILU1
LinkDB
All DBs
Position
complement(990198..991865)
Genome browser
AA seq
555 aa
AA seq
DB search
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
VKHAEKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANQVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGISDSEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQALITKHLEKVLERKTNQWSEIKNEITETLAPFLYE
RTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaactattgacagaccaacaagttggcgtttttgccctcggcggactgggtgaaatc
gggaaaaatacatacggcgtacaatttcaagatgaaatcattgtcattgacgcgggcatt
aaatttccggaagacgaactgctcggcatcgactacgtcatcccggattattcgtattta
gtgaaacatgcagaaaaagtgaaaggtttgttcattacccacgggcatgaagaccatatt
ggcggcattccgtatttgcttcggcaagtgaatatccctatttacggtgggaaactggcg
cttgggctcattcgcaataaactcgaagaacacggattgcttcgtcaagctaaactcatt
gaaattcgtgaggacgatgtcattcgtttccaaaaaacagcagtcacctttttccgcacg
acgcacagcattccagacagctacggcatcgtcgtcaaaacaccggtcggccaaatcgtc
cataccggagattttaaatttgactttacgccggttggcgagccagccaatttgacgaaa
atggcggaaatcgggaaagaaggcgtcctttgtctgctttcggacagcacaaacagcgaa
attccgcatttcacgatgtcagaacggcgggtcggtgaaagcattcacgacattttccgt
aaagtggacggacgaattattttcgcgacgtttgcctctaacatccaccgacttcagcaa
gtgacggaagctgcagtcgccaacaatcggaaaattgccgtctttggccgcagcatggaa
gcagccattgaaatcggccaagatctcggctacattaaatgtccgaaaggcacgttcgtc
gatgcaaacgaaatcaatcgactcccagcaaaccaggtgaccattttatgcaccggcagt
caaggcgaaccaatggcggccctatcacgcatcgccaacggtacgcaccggcaaattcaa
atcatcccgggcgacacggttgtcttttcttcgtcgccgattccgggcaacacggtgagc
gtcaaccgaacgatcaacatgctataccgggccggcgccgaagtgatccacggtccgctc
aacgatattcacacgtcgggacacggcgggcaggaagaacaaaaactaatgatccggttg
atgaaaccgaaatattttatgccaattcacggcgaataccgcatgcaaaaaatgcacgcc
aagcttgccatcgactgcggtgtgccagaggaaaactgctttattatggataacggtgaa
gtgctcggcatcagcgacagcgaagcacgcatcgtcggcaaaattccgtccggctctgtc
tacatcgacggcagcggcgtcggcgatatcggcaacattgtcttgcgcgaccgtcgcatt
ttgtcggaggaagggctcgtgatcgttgttgtcagcatcaatatgaaagaatttaaaatc
gcggccggtcctgatattatctcccgcggcttcgtctacatgcgcgagtcaggtgatttg
atcagcgaggcacaggcgctcatcaccaaacatctcgaaaaagtgctcgagcgaaaaacg
aatcaatggtcggaaattaaaaatgaaattacggaaacgctcgctccgttcttatatgaa
cgaacgaagcggcggccgatgattttgccgatcatcatggagatttaa
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