Geobacillus thermodenitrificans: GTNG_1151
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Entry
GTNG_1151 CDS
T00496
Name
(GenBank) HDIG/HD/KH domain protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
gtn
Geobacillus thermodenitrificans
Pathway
gtn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTNG_1151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtn03019
]
GTNG_1151
Messenger RNA biogenesis [BR:
gtn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GTNG_1151
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
EAD2
DUF3450
KH_2
Motif
Other DBs
NCBI-ProteinID:
ABO66525
UniProt:
A4IMH1
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Position
1215436..1216992
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AA seq
518 aa
AA seq
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MGSIIISALLALVIGAVVGFFVRKSIAEAKIGGAKAAAEQLIEEAKRAADALKKEALLEA
KDEIHKLRTEAEHDIRDRRSELQKQENRLMQKEENLDRKDEALNKREALLEAKEEALNER
QQHIEQMESKVETLIKQQQTELERISGLTRDDARHLILERVEKELSHEIAMMVKEAETRA
KEEADKRAKAILSLAIQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGI
DLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVGKARREVDEHIREV
GEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSVEVAFLAGLMAAELGEDEMLAR
RAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDTEPTSVIAVLVAA
ADALSAARPGARSETLENYIRRLEKLEEIAESYEGVEKSYAIQAGREVRIMVKPDMIDDL
EAHRLARDIRKRIEEELDYPGHIKVTVIRETRAVEYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgatcatcatctccgctttgcttgccttagtcattggtgccgttgttggcttt
tttgttcgcaaatcgattgccgaagcaaaaatcggtggggcgaaagcagctgccgagcag
ctgattgaagaggcgaaacgcgcggcggacgccttgaaaaaagaggcgcttctcgaagcg
aaagacgagattcataaattgcgtacggaagcggaacacgatatccgcgaccggagaagc
gaactccaaaaacaagaaaaccgcttgatgcaaaaggaggaaaacctcgaccgcaaagat
gaggcgctcaataaacgcgaggcgctgctcgaagcgaaagaagaagcgttaaatgaaaga
caacagcatattgaacaaatggaaagcaaagtggaaacgctcatcaaacagcaacaaacc
gaactcgaacgcatttccggattaacgcgcgacgatgcgcgccacctcattttagagcgc
gtcgaaaaggaactgtcgcatgagattgcgatgatggtcaaagaagcggaaacgcgggcg
aaagaggaggcagacaagcgagcaaaggcgattttgtcactcgccatccagcgctgcgcc
gccgatcatgtcgccgaaacgactgtctctgtcgtgaacttgccaaacgatgaaatgaaa
gggcggatcatcggacgcgaagggcggaacatccgtacgctcgagacgctcaccggcatt
gatttaattattgacgatacaccggaggcggtcattttgtccggatttgacccgattcgt
cgcgaaacagcgcgcattgcgctagataagctcgtgcaggacggccgaatccatccagcg
cgcattgaagaaatggtcggaaaggcgcgccgcgaagtggatgaacacatccgcgaagtc
ggtgaacagacgacgtttgaagtcggcgtccacggcttgcatccggatttgattaaaatt
ttagggcggcttaagttccggacgagctacgggcaaaacgtcctaaaacattcggtggaa
gtggcgtttttagccgggctgatggcggccgagctcggggaagacgaaatgttggcgcgt
cgggccggcttgcttcatgacatcggcaaggcgatcgaccatgaagtggaaggaagccat
gtggaaatcggcgttgagttggcgacgaagtataaagaacatcccgttgtcatcaacagc
atcgcctcccaccatggcgataccgagccgacatcagtcatcgccgtgctcgttgcggca
gcggacgccctgtcggcggcacggccgggggcgcgcagcgaaacgctggaaaactatatc
cgccgcttagagaagctcgaagaaattgcggaatcgtacgaaggggtggaaaaatcgtac
gccatccaagctggccgcgaagtgcgcatcatggtcaaaccagatatgatcgacgatttg
gaagcgcatcggttggcgcgcgatatccgcaagcgaatcgaagaagagctcgattatccg
ggtcatattaaagtgacagtcatccgcgaaacgcgggcggtcgaatatgcgaaataa
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