Geobacillus thermodenitrificans: GTNG_3010
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Entry
GTNG_3010 CDS
T00496
Name
(GenBank) RNA polymerase sigma-54 factor RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
gtn
Geobacillus thermodenitrificans
Pathway
gtn02020
Two-component system
gtn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gtn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GTNG_3010
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GTNG_3010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtn03021
]
GTNG_3010
Transcription machinery [BR:
gtn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GTNG_3010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_Tnp_ISL3
HTH_AsnC-type
HTH_23
Sigma70_r4
HTH_Tnp_4
HTH_Crp_2
Sigma70_r4_2
HTH_10
HTH_17
HTH_3
MarR_2
HTH_24
LacI
HTH_IclR
HTH_32
HTH_AraC
HTH_38
HTH_PafC
HTH_28
HTH_21
TrmB
PCI
Fe_dep_repress
MarR
HTH_5
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
ABO68355
UniProt:
A4ISQ1
LinkDB
All DBs
Position
complement(3107125..3108432)
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AA seq
435 aa
AA seq
DB search
MRAELWQEQRLQLSLTKELVQAIELLQYSALDLEAFLYEQSLENPFLEIRRGRMRRRTSR
TDKDRKQWLENISGRTETLAGHLLAQLPGLMLPAKEERMVRHLIAALDEDGYLRVPLAEL
AARFSVSEQEVERALRFVQSLDPPGVGARDLAECLLLQLERRPERDELAETIVRHHFVAF
AEKAWKTLAKQLGVSLGELQRVFELIRTLEPRPGIHYANETPHFIVPDLIVTRQADGGWI
VTYNDDIHPELGWNKEYERHIVAVGDRHAERFMKEKYRQFTWLAKSLEQRKQTLVHLMGI
IIDRQRSCFESGLSALKPMTMREVAEELGVHESTVSRAVRHKYVQTPFGMIELRRFFSSA
ATAGAGETASSVQVKAIIQTLISAEDRRAPLSDQQLADLLRDQHGIAISRRTVAKYREQL
RIPSSAKRKQYTSLP
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagggcggagttatggcaagagcagcggctgcagttgtcgctgacgaaggagcttgtg
caggcgattgaactgctgcaatattcggcacttgatttggaagcgtttttatacgaacag
tcgcttgaaaacccatttttagaaattcgccgcggtcggatgcggcggagaacaagccga
acggacaaagatcggaagcaatggctcgaaaatatcagcggtcggacggagacgcttgct
ggccacttgcttgcccaacttccgggattgatgctgccggcgaaggaagagcgcatggtt
cgtcatctgatcgctgcgctggatgaagatggctatttgcgcgtaccgcttgccgagttg
gcagcgcgattctccgtatcggagcaagaggtcgaacgtgcgctgcgttttgtgcaatcg
cttgacccaccgggagtcggtgcgcgtgatttggccgagtgtctccttctgcagcttgag
cgccggccggagcgcgatgagttggcggagacgatcgttcgccatcattttgtcgccttt
gccgaaaaagcgtggaagacgcttgcgaaacaactcggcgtcagcctcggtgagctgcag
cgtgtcttcgagctcatccgcacgcttgagccgcggcccggtatccattatgcgaacgaa
acgccgcattttatcgtgcccgatttgatcgtcacccgccaagcggacggcggttggatt
gttacctataacgatgacatccatccggagctcgggtggaataaggaatacgagcggcat
attgttgccgttggcgatcggcacgctgagcgatttatgaaagaaaagtatcggcagttt
acatggctcgccaaaagtttagaacaacggaagcagacgctagttcacctcatgggcatc
attattgaccgccagcgctcttgttttgaaagcggcctgtcggcgctgaagccgatgacg
atgcgcgaagtggccgaagaactcggcgtccatgaatcaactgtgagccgtgcggtccgg
cataaatatgtgcaaacgccgtttggcatgatcgagctgcgtcgctttttttccagtgct
gccacggctggagcgggggagacggcttcctctgttcaagtgaaagcgatcattcaaacg
ctcatttccgccgaagaccggcgggcgccgctttccgaccaacagcttgccgatttgctt
cgcgatcagcatggcattgccatctcacgacgcacggtcgccaaatatcgcgaacagctg
cgcattccgtcatcagccaaacgaaaacaatatacgagcctgccgtaa
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