Gloeophyllum trabeum: GLOTRDRAFT_109324
Help
Entry
GLOTRDRAFT_109324 CDS
T03130
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03013
Nucleocytoplasmic transport
gtr03015
mRNA surveillance pathway
gtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GLOTRDRAFT_109324
09122 Translation
03013 Nucleocytoplasmic transport
GLOTRDRAFT_109324
03015 mRNA surveillance pathway
GLOTRDRAFT_109324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_109324
03041 Spliceosome [BR:
gtr03041
]
GLOTRDRAFT_109324
Enzymes [BR:
gtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GLOTRDRAFT_109324
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GLOTRDRAFT_109324
Spliceosome [BR:
gtr03041
]
Complex C
Other components
EJC/TREX
GLOTRDRAFT_109324
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GLOTRDRAFT_109324
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
19299022
NCBI-ProteinID:
XP_007861373
JGI:
Glotr1_1_109324
UniProt:
S7QNL0
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MSANDNEELIDYEDEQDVVTNGVAVTGAAAATAGAVADGEGKEEKKNFSGIHSTGFRDFL
LKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVN
GEVSVIVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGIPIAKDAEILRDKTKCPHIV
VATPGRLNALVRDKILDAKHVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSA
TLAKDIRVTCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEVQKNRKLNELLDTLEFNQ
VVIFVKSVARCIELDKLLVSCNFPSISIHSGLAQEERINRYTSFKAFEKRILVATDIFGR
GIDVERVNIVINYDCPPDADSYLHRVGRAGRFGTKGLAITFLSSEADQQVMAAVQSRFEV
AVPELPDHIDPASYMTS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccaacgacaacgaggaactcatcgactacgaggacgagcaggacgtcgtcacc
aacggtgttgctgtgacaggcgctgctgctgctactgcaggcgcagtagccgatggcgag
ggcaaggaggagaagaaaaacttctctggaatccattccaccggcttcagggacttcttg
ttgaaacccgaacttctgcgagctattagcgaccttggttttgaacatccctcagaagtt
caacaagaatgtatccctcaggctgtacttggaatggatgtcctttgccaggccaagtct
ggccacggcaagactgccgtcttcgtcttggcaacattgcagcaacttgagcccgtcaac
ggcgaagtttctgtcattgttctttgccacacccgagaactggccttccagatcaagaac
gagtacactcgattcgcgaagtacatgcccgatgtacgcgtcagcaccttctacggaggt
attcccatcgccaaggacgccgaaattctgcgagacaagaccaagtgtccccacattgtg
gtcgccacgccaggacgtctgaatgccctggttagagacaagattttggacgcgaaacac
gtgaagcactttgttctcgacgagtgcgacaaaatgctcgaacaacttgacatgcgccgc
gacgtgcaagaaatctttcgcgctacgccccaccacaagcaagttatgatgttcagcgcc
acactcgcgaaggacatccgggtcacttgcaagaagttcatggcaaaccccctcgaaatc
ttcgtggatgacgagacaaaattgacgctgcacggtctacagcagcactatgtgaagctg
gaggaagtacagaagaataggaagttgaatgagctgctggatacgctggagttcaaccag
gtcgtcatctttgtcaagtccgttgcgcggtgcattgagctggacaaattactcgtctct
tgtaatttccccagtataagcattcactcagggctcgcccaggaggaacgtatcaaccgc
tacacgtccttcaaggcttttgagaaacgtatcttagttgccacggatatttttggtcgt
ggaatcgatgtggagcgggttaatattgtgatcaactatgattgccctccggatgccgac
agctacctgcatcgtgtcggtcgcgctgggcgattcggcaccaagggtctcgctatcaca
ttcctctcgtctgaggcggaccagcaggtcatggcagctgtgcagtcaagattcgaggtg
gcagtgcctgagctgcctgaccacattgatccggccagctacatgacttcttga
DBGET
integrated database retrieval system
