Gloeophyllum trabeum: GLOTRDRAFT_111016
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Entry
GLOTRDRAFT_111016 CDS
T03130
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03018
RNA degradation
gtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GLOTRDRAFT_111016
09123 Folding, sorting and degradation
03018 RNA degradation
GLOTRDRAFT_111016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_111016
03041 Spliceosome [BR:
gtr03041
]
GLOTRDRAFT_111016
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GLOTRDRAFT_111016
mRNA degradation factors
5'-3' decay
Lsm complex
GLOTRDRAFT_111016
Spliceosome [BR:
gtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GLOTRDRAFT_111016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
19299319
NCBI-ProteinID:
XP_007865861
JGI:
Glotr1_1_111016
UniProt:
S7RMY9
LinkDB
All DBs
Position
Unknown
AA seq
123 aa
AA seq
DB search
MADRGRGAARGARGSSASARGRGGPQGPQPTMDKPKREAILDLSKYVNERIRVKFTGGRE
VTGVLKGFDQLLNLVLDEVEEQPTEPSPRKRNLGLVVLRGPTITLLSPVDGFEEIANPFV
AQE
NT seq
372 nt
NT seq
+upstream
nt +downstream
nt
atggcggatcggggccgtggtgctgctaggggtgcaagaggatcatctgcgtctgctaga
ggtcgaggaggtccacagggaccgcagcccaccatggacaaaccgaagcgtgaagctatt
cttgatctttcgaagtatgttaacgaaagaattagggtgaagttcaccggcggtagggaa
gttacgggagtgctcaaaggatttgaccaactgcttaaccttgtacttgacgaagttgaa
gaacaaccgacagagccttcaccgcgcaagagaaatctggggctggtcgtactccgcggc
cccacgataactctcttgagccctgtagacggcttcgaagaaatagccaaccccttcgtg
gctcaagagtag
DBGET
integrated database retrieval system
