Gloeophyllum trabeum: GLOTRDRAFT_115299
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Entry
GLOTRDRAFT_115299 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03022
Basal transcription factors
gtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GLOTRDRAFT_115299
09124 Replication and repair
03420 Nucleotide excision repair
GLOTRDRAFT_115299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtr03021
]
GLOTRDRAFT_115299
03400 DNA repair and recombination proteins [BR:
gtr03400
]
GLOTRDRAFT_115299
Transcription machinery [BR:
gtr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GLOTRDRAFT_115299
DNA repair and recombination proteins [BR:
gtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GLOTRDRAFT_115299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH_TFIIH
BSD
DUF6879
DUF2458
Motif
Other DBs
NCBI-GeneID:
19300017
NCBI-ProteinID:
XP_007864434
JGI:
Glotr1_1_115299
UniProt:
S7QBI2
LinkDB
All DBs
Position
Unknown
AA seq
605 aa
AA seq
DB search
MPPSTVCTAKASYKKAPGLLELTDTHLQWSQDGKKAPSIRVPYAELASLFCSKEGAAQVR
LKVGLVSDDAGHNFTFTSPQPVALSERETFKRELTNIIARNRSTAEPTTPKPVIATSPIT
PVSNGHPPPLRPSGAATPALPPPISRAASVVSSGGTPGPGGAVSASDFKLRKKVLVNNPE
LATLHRELVMTGQITEAEFWEGREHLLAAQAAADSQKRGRPGALVDPRPQTVEGGDIKIV
ITPQLVHDIFEEFPIVAKAYNENVPKPLNEADFWKRYFQSKLFHAHRASIRSSATQNVVK
DDPIFDKYLEKEDNELEPRRQRDEEVEIFIDLGATQEDHDVTGNEKDITMQAGKQKGVLP
LIRKFNEHSERLLKSALGEDGPTTKRRRIDDDASHLRDYYAQIDIEDLHDLQDTTGIILE
MQDRQRYFEGGMKSAASEDASKHEIDIKVALREAKDNLHDWAGALSNLKLEKKAADASVV
AMTQNVQARLTTKTRKNDIPEGLFRQMRTCQTAANEFLRQFWSSVYPPLSDLQSANPPTP
AQKAAKAAKMAGYLAKTHEKVEALVRTAHAEGIDPERVRVAMKPLTDAVDQALTFHRTRK
PVNAK
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgcctccttcaaccgtctgtacagcgaaagcgtcgtacaagaaggctccgggactgcta
gagctcacagacactcaccttcaatggtctcaggacgggaaaaaggctccgagcataaga
gtcccttacgctgagctcgcttccttgttctgtagtaaggaaggcgctgcgcaagtcaga
ctgaaagtgggtctggtcagtgacgacgctgggcataattttacctttacgtcgccccaa
cccgtcgcgctctcggagcgagagaccttcaaacgcgaacttacgaatatcattgcgcgc
aatcgtagcactgctgagcccacgaccccaaaacctgtcattgcaaccagtcctattact
ccggtttcaaatggccatccgccacctctgcgtccctctggggccgccactcccgctctc
ccgccgcccatttctagagcggcaagtgtggtgagtagtggaggaactccaggacctgga
ggtgcggtatctgcatccgacttcaagctgaggaagaaggtactcgtgaacaaccccgag
cttgctaccttacatcgggaacttgtgatgaccggtcaaatcactgaagctgaattctgg
gaggggagagaacatttactggctgctcaggctgccgcggacagtcagaaacgaggtcgg
cctggagcgttagtggacccacggccacaaacggttgagggcggtgacatcaagatagtc
atcacaccccagctagtccacgatatcttcgaagagtttccaatcgttgcgaaggcatat
aacgagaatgttcccaaaccactaaatgaggcagacttctggaaacgatacttccagtca
aagcttttccacgctcaccgcgcatctatacggtccagcgccacgcagaatgtggtgaaa
gacgatcccatattcgacaaatacctggagaaggaggataatgaactggagccacggcga
cagcgcgatgaagaggtcgaaattttcatagacctgggtgccactcaggaagatcatgac
gtgaccggcaacgagaaggacataacgatgcaggcggggaagcagaagggggttcttccc
cttatccggaagtttaatgagcattcggaacgtctattaaaatccgctctaggcgaagac
ggtcctacgacgaaacgcagacgaattgacgatgatgcatcacacctacgagattactat
gcacagattgatatagaagatctgcacgatttgcaagacaccactggtataatccttgag
atgcaagatcgacagcgttatttcgaaggtggcatgaagagtgccgcctcggaggacgcc
tcgaaacacgaaattgatatcaaagttgcgttgcgagaagccaaagacaacttgcatgat
tgggccggagcactcagtaatctcaagctagagaagaaagcagccgatgcctccgtggta
gccatgacccagaatgtccaggctcgtctaactactaagacgcggaaaaatgacatccct
gaaggactgttccgccaaatgagaacatgccaaacagctgccaatgaattcttgcggcaa
ttctggtcctcagtatatccaccactttcggacctacaatcagcaaacccacctacacca
gcacagaaggctgcgaaagctgctaaaatggcaggttatcttgcgaagacgcatgagaag
gtcgaagctttggtacggactgcgcatgccgaaggtatcgaccccgagcgcgtgcgagtg
gccatgaagcccctcacggacgctgttgaccaggctctgacatttcaccgcaccagaaag
cctgtcaatgccaagtag
DBGET
integrated database retrieval system
