Gloeophyllum trabeum: GLOTRDRAFT_115327
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Entry
GLOTRDRAFT_115327 CDS
T03130
Name
(RefSeq) TPR-like protein
KO
K12600
superkiller protein 3
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLOTRDRAFT_115327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_115327
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
GLOTRDRAFT_115327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_16
TPR_8
TPR_1
TPR_14
TPR_12
TPR_CcmH_CycH
TPR_17
TPR_22
ANAPC3
TPR_7
TPR_9
TPR_11
Coatomer_E
ARM_TT21_5th
TPR_Slam
Fis1_TPR_C
PknG_TPR
PSD13_N
INTS1_R4
DUF4726
Motif
Other DBs
NCBI-GeneID:
19300024
NCBI-ProteinID:
XP_007864474
JGI:
Glotr1_1_115327
UniProt:
S7RRU8
LinkDB
All DBs
Position
Unknown
AA seq
1384 aa
AA seq
DB search
MASIVKNKLKAAREAIAKKDYEAARNNASMVLEFEPDNYNASGLSRFYERTANWRMYAEV
LLRMARLHADSGDATKCAEIIQRYVELCRRMGSRMEIVHALCLFLPDSPFYPVLSTLPHP
DPTNPTATTTFAAQTAVHNPLPVLEEIVALVEKEEEDTFQREFDKRRTRLNAAGPEQLKK
DIGREMWGTSRLPELYNEILNHPDTSDETRRAVEAKLLRHRQRYLHALPLSDEKISVAAE
VESLVNGVVLLGIPDEFAWVYYIDGMDSETLEGYDYAVLWRFVGLFPDAPLARLLKAYFA
YAGIRNSDDEEDKDEGEEEKKEVDTAAQAKAQVKALNRMTDAFPRLKDSTIAHHIMATIY
VEEQEYESTIKVAESGSVLLKRVADERATAQPSPRKEKALNIALATALVHLYPPKHHARA
IPLLDDILVKDPRNTACLMGRGYVLQHAAKWAEASEFFLKAVESASENPEVRIRAQEEAA
WCQVQMGELEGAAEALRGVLEELGSMKDKDVDMARCWWRLGRCLWETGEDRREEAYRMFI
TALKSSPSYAPAFTSLGVYYADHGDPTRAAKCFQKAFELDAREAYAARRLAEGFAEEREW
DLVEVVARRTIEGEGGFDAAAGRYLPTNAWAWKALGVVELNRRNYSQAITSLQIALRADE
ADELSWLRLGEAYSRAGRHVAALKALGRAHQLRPDNWICSYLIADVQRQSAQYDEAIQSF
ETILQDLPSELGVMLSLAQTYLDHGLAQNSSGFIGRAEASFLSAIERSLQALFVSSSNHG
VAWKTIADALFYLFELTSFADSDRASSLFSRVAEYASSDFGGHLSGIVSLPIEIPDVPDG
RTALKLALASYNHRISLGLNEATAASAWSDLGVAAYVLSCKSPKPQIQEHALHRAISSVK
EAIRIEPDNDNFWNTLANMHFVKQPKVSQHAYIRALEINSKDAVTWTNLGLLYLYNNDPD
LAKEALSRAQTLDPDHILAWLGQALLAMSTGRDAEARALFEHAVGLSADVPEADLEYAER
TFKRLSSVSQRQQSYLDVLLPVFLVLDRFCRRRPEDIDGLHLMALVCEHVGHVELGLEKT
EQAIAILEKVYEESEDPMVERQFVVANTTLGRLRLAAQDYSGAVESFETVMNLLAEDEQP
ASRVLRVQAMFGAGLANFKTGDIARAQELLELAWETSADDVSLKGQVAVLLAQVLWGSRT
PEAQETAKSRLLECIADDPENLMAIAVLAGMGILTTDDDLVDATLSEILALPVDKRHALD
PARDVTQLLMKHQLDQNNISEALSIAQHALLSEPARQEMRRETASLTLQADDAGSALAIL
SGAQAQGNIEDLLKSSRIRAVALALEEQGDLEEARKVAQKSVMLAPWDKDNWRTLAFTQC
RSVQ
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcatagtgaagaacaagctcaaggcggcgcgggaggccatagcgaagaaagac
tacgaagccgcacgtaacaatgcctccatggttctcgagttcgagccagacaactacaac
gcgtcaggcctgtcgcgattttacgagcgtactgcgaactggagaatgtacgccgaggtt
ctcctgcgcatggcgcgtctacatgcagacagtggagatgccactaaatgtgcagagatc
atacaaaggtatgtggagctctgtcgcagaatggggtcccgcatggagatcgtccatgct
ctctgcctgttcctccccgactccccgttttaccccgtcctctccaccttgccgcatccc
gaccctacgaacccaaccgccaccacgaccttcgccgcgcagacggccgtgcacaatccc
ttgcccgtcctggaagagatcgtcgctctcgtggagaaggaggaggaagacacgttccag
cgggagtttgataaacgcaggacgcggctgaacgctgcggggcctgagcagctgaaaaag
gacatcgggcgggagatgtggggtacttcgcggctaccagagctgtacaacgagatcctg
aaccaccccgacacatccgacgagacccgccgtgcggtggaggcgaagcttctccggcac
agacagcggtacctgcacgcgctaccgctctccgacgagaagatttcagtcgcggcagag
gtggagtctctcgtcaacggcgtcgtactgctcggcattccggatgagttcgcgtgggtg
tactatatcgacgggatggatagcgagacactggaggggtacgattatgcggtgctttgg
agattcgtgggcttatttccggatgcgccgctggcgaggctgttgaaggcgtactttgcc
tacgctgggatacggaattctgatgacgaggaggataaggacgaaggcgaggaagagaaa
aaagaagtcgacactgccgcacaggccaaagcgcaggtgaaggctcttaaccggatgact
gatgctttcccgaggctgaaagattccacgatcgcgcaccatattatggccacgatctat
gtcgaggagcaggaatacgagagcacgatcaaagtcgcggaatcggggtcggttttgctc
aaacgagtcgccgacgagcgcgctacagcccagcccagccccagaaaagagaaagcgctg
aacatcgcgctggcgacggccctcgtgcacctgtacccgccgaagcatcatgcgcgcgcg
atcccgctcctcgacgacatcctggtcaaggaccctcgtaacaccgcgtgcttgatgggc
cggggatacgtgctccagcacgcggccaagtgggcagaggcgagcgagttcttcctcaag
gctgttgagagcgcctctgagaaccccgaggtgcgcatacgcgcgcaggaagaggcggcg
tggtgccaggtgcaaatgggggagctggagggagctgcggaggcacttaggggtgtgctg
gaggagctggggagtatgaaagataaggacgtggatatggctcggtgctggtggaggctc
gggagatgtctctgggagacgggggaggaccgccgtgaagaagcataccgcatgttcatc
accgcgctcaagtcctcaccgtcctacgcgcctgcgttcacctcgctgggggtgtactac
gccgaccacggggacccgacgcgcgcggcgaaatgcttccagaaggcgttcgagctggac
gcgcgcgaggcgtatgcagcgcggaggctcgcggagggttttgcggaggagcgggagtgg
gacctggtggaggtggtggcaagaaggacgattgagggcgagggcgggttcgatgcggct
gctgggaggtatctgccgacgaatgcttgggcgtggaaggcgctgggcgtggtggaactg
aatcgacggaattatagccaggctattaccagcctgcagattgctctgagggctgatgag
gcggacgagctgtcctggcttcgactcggggaagcgtacagccgagcggggcgccacgtc
gctgccctgaaggccttggggagggcgcaccagctgaggccggacaactggatctgctcg
tatctcatcgccgacgtgcagcggcagtctgcgcagtatgacgaggccatccagtctttc
gagactatcttgcaggatctgccttccgagctcggcgtcatgttgtctcttgcgcagacg
tatctggaccatgggctcgctcagaattcctcgggattcattggaagggcggaggcgtcg
ttcttgtctgcgatagagcgatctctccaggcgttgttcgtcagctccagcaatcacggc
gtggcgtggaagacgattgccgatgcgcttttctacctcttcgagctgacttcgtttgcg
gattcggatcgtgcaagcagtcttttctcgcgagtagctgagtacgcgtcctcggacttc
gggggtcatctttccggcatcgtatcgttgcctatcgagattccagacgtccctgatgga
agaactgcactgaagcttgcgttggcttcgtacaatcaccgcatatctcttggtctgaat
gaggcgactgccgcgagtgcgtggtccgatcttggtgtcgctgcatacgtcttgtcctgt
aagtccccgaaacctcaaatacaagagcatgcactgcacagagcgatatcgagcgttaag
gaggcgatacgcatcgagcctgataacgataatttctggaacacgctagccaatatgcac
ttcgtgaagcaacccaaggtctcgcaacatgcatacatcagagcactggagatcaattcc
aaggatgccgttacttggacgaatttaggtctgttatacctgtacaacaacgatccggac
ctggcaaaagaggcattatcaagagctcagactctcgatccggatcatattctggcctgg
cttgggcaagcactccttgcaatgtccaccgggagggacgcggaagcgagggctttgttc
gagcacgcggtgggattgtctgcggatgtaccggaagcggaccttgaatatgcggagagg
acgttcaagagactgtcatctgtgtcgcagcgacaacagtcttacttggatgtgctccta
cccgttttcctggtattggacagattctgccgccgtcgcccagaggacatcgacggattg
catctcatggctcttgtgtgcgaacacgtaggccatgtggagcttggccttgagaagacc
gagcaggcaatagcgatactagagaaagtgtacgaagaatccgaggaccccatggtcgag
aggcagttcgtcgtagctaatacaactttgggtcgcttgcgtctcgcggcccaggattac
tcgggcgctgtcgaatcattcgagaccgtcatgaacttactggccgaagacgagcagcct
gcgagccgcgttcttcgggtacaggcgatgttcggcgctggcctcgcgaacttcaaaaca
ggcgatattgcccgagctcaggaactgcttgaacttgcctgggaaacttccgccgatgac
gtatcactgaaagggcaagtagctgtgttgctggcccaggtgttgtggggcagcagaacc
ccggaggctcaagaaacagcgaagtcccgtcttctcgaatgcattgcagatgacccggag
aacctcatggctatcgctgttcttgcaggtatgggtatcctgaccaccgacgatgatctc
gtggacgcaacactttcggaaatcctcgcattacctgttgacaaacgtcatgctttggat
cctgcgagagacgtgactcagttactcatgaagcatcagttagaccaaaacaacatctcc
gaggcactttcgattgcccagcatgccctcctgtctgagcctgcccgccaggagatgagg
cgagagacggcgtctctgactctacaggcagacgacgcaggcagtgccttagccatcctg
agcggtgcacaagctcagggtaacattgaggacctcctcaagtcgtcgcgaatccgggcc
gtggcgcttgcactcgaggagcaaggagacttagaagaggcacgcaaggtggctcaaaag
agcgttatgctcgcgccctgggacaaggacaactggaggacactcgcttttacccaatgc
cgctcggtccaataa
DBGET
integrated database retrieval system
