Gloeophyllum trabeum: GLOTRDRAFT_115866
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Entry
GLOTRDRAFT_115866 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLOTRDRAFT_115866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_115866
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GLOTRDRAFT_115866
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
GLOTRDRAFT_115866
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
RRP40_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
19300104
NCBI-ProteinID:
XP_007865416
JGI:
Glotr1_1_115866
UniProt:
S7QA13
LinkDB
All DBs
Position
Unknown
AA seq
286 aa
AA seq
DB search
MDLAEVEYDGGARLTCPGDYITSSQAFMRGHGTYVENDQVIASVAGTVERVNKLVTVRAI
RTRYSPEVGDLVVGRITEVQPKRWKVDANSRQDAVLMLSSVNLPGGVQRRKLESDELQMR
TFFEEGDLLVAEVQAFFSDGAMSLHTRSLKYGKLRNGQLIAVPPILVRRLKSHFITLPCG
VDLILGLNGYIWVSKHVKDNDQEGEEGFDAEAVYSSQNDDIDEATRSAISSVTNIIRVLA
AHFVPLTDAILLEAYAWVMDQEIGTKDILQEETSDFLVAALTSSRE
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggacctggccgaggtcgaatatgatggcggcgcacgattgacatgtccaggagattac
atcacgtcttcgcaagctttcatgcgcgggcatggcacttatgtcgagaacgaccaagtc
atcgcctctgtagcgggcactgtcgaacgtgtgaataagctggtaacggtacgcgccatc
cgaactaggtacagcccagaggttggcgatctcgttgtgggccgaattacagaagtgcag
cctaagcggtggaaggtcgacgccaactcccggcaggatgccgtcctgatgctctcgtca
gtgaaccttcccggaggagtgcagagacgaaaactggaaagcgatgaattgcagatgcgc
acattcttcgaagagggtgatctgctcgtcgcggaggtgcaggcgttcttctctgacggc
gccatgtcgttacacacacgttcgctcaagtacggcaagctgcgcaatggccaactcatc
gcggtcccgcccatcctggtccgacggctcaagtcgcatttcatcacgctgccgtgcggg
gtggacttgatcctggggctgaacgggtatatctgggtgagcaaacacgtgaaagataat
gaccaggaaggcgaagagggctttgacgccgaggctgtgtattcaagtcagaacgacgac
attgatgaggcaactcggtcagccatttcgagcgtgaccaatataatacgggtgttggcg
gcgcattttgtgccgctcacggatgcaatattgttggaggcgtatgcgtgggtgatggac
caggagataggtaccaaggacattctccaagaggagaccagcgatttcttggtggctgca
ttgaccagttcgagagaataa
DBGET
integrated database retrieval system
