Gloeophyllum trabeum: GLOTRDRAFT_117039
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Entry
GLOTRDRAFT_117039 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
gtr
Gloeophyllum trabeum
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gtr03009
]
GLOTRDRAFT_117039
04121 Ubiquitin system [BR:
gtr04121
]
GLOTRDRAFT_117039
Enzymes [BR:
gtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
GLOTRDRAFT_117039
Ribosome biogenesis [BR:
gtr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
GLOTRDRAFT_117039
Ubiquitin system [BR:
gtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
GLOTRDRAFT_117039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LTN1_E3_ligase_6th
UBC_like
Ltn1_1st
zf-RING_2
FANCL_C
zf-ANAPC11
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
zf-C3HC4
C1_1
Motif
Other DBs
NCBI-GeneID:
19300280
NCBI-ProteinID:
XP_007867993
JGI:
Glotr1_1_117039
UniProt:
S7RHD0
LinkDB
All DBs
Position
Unknown
AA seq
1694 aa
AA seq
DB search
MGKGQKSSASSGTRKKHARKAAGPQEPTPTKDKRDKGTGKGKGKNKEPRKKVYIPPTKPA
PARPDPLDTLGLANQLPPELLVVLRSLRKKDAVTKAKALEELLGAWVERALGTRDEGAVA
ATLVLMLPVWVHHMPALFLHPSRRIRLLAASVHSSLLRIPDARAALLTFLADAAPPDQAE
CVLGAWCMAGSDADRLVARHARASWEDFVSLAPPSALALDESALLRMLQRTALDPGAVYL
SLNPPQVSVEPGVPGRKAPPKRREEEPVRAKTEDEEESEDDRNARLRVGALGGLKWVLGL
AEILGNPALWTSLSHARAAPWVDVPSFGCGQPVVRRAAWALVQALVGHWAEEVKNADLLG
VLSTVVLRSAWVEPDPTVRTVMWQPLMMFLKEFPQAWTVDGSKTAADDASESDGDHSDEE
DGDREQGTPGPAPTTPGTSLAYDEFLQFLQLGCAGSPLQGYPTVVIVLSTLPASFLSTPT
VEDALKDLFTSFWAAVDARALGGLDKAAAHRAFLSSLLECTAFLVRRIRQDPAFRDANVD
AHEVRRWLVGEQSARVMEALAGGGLRVEGAGAGAGALVGRHLEALEGVDIELFRAAWAPV
DATLARVGARFACGALKAFWETFGEGSEARAAARRAIGEVARRAVGEAIDETVQANVAQL
VDAAPSLLLAYLTHRNDQARALEIWRRILDVLSGKDPRELATRIAPFARAGALPCYCAPE
DGELDEPLTRLVAHASGGSVDSEAAGVVCSVLRNPQYFLSSAARVGLVEGLVATFGVHVQ
QALRDPAAAAYTQAFENLLGLLEAALAGDPAVLSSSTLGVGLLPDLCLFAYVLPTFSSSK
GEAYFEKARDLWNGWWGQSTEESRSDTQAALVGKLRDIILDTQVAVTPDSVLDVLWDGIP
GLDIQAADVLPDSGTMLRMLEGLPTYPEDPSAAVVNNLIPPASLLGDRVTWTPEYDSEGY
SQYGRVTTAFARVFASDRQAAKEHIWALQHLLAASVYAEDQVQLSLERNPLCTRKVSRAK
LQAFVSRVQSITAYLLVPDAEDGWHSKIVNAAQDPAIERSTPSTLTAHLIQYASGHDNPR
EARVLYAALQTVMSGATKEEADEWIMLARKLEKKAPLTSIALVSCVTAFGPEPPRLDRYR
NELAAGIFGVPASKANDEGLLSLLRLAATAPDPESDVVFLPQPRAINLMKACQQWVESDE
DISEDVESAMTLIFYHLVPILQDVPGGHWDFIFDVIENNLENGSFNENSTLVTLARTFRL
IIAIQDIATTNKSLRALWDERRQAVLTLVRDLIASRESSRAPSTPQLMSLELAMSIVQDM
PDSLHDAKILPSMCRLIVNTSSETQKMAYHLLQESSRKYTENLVIEAGVDTEANVKCELP
MELVDILQRSISDDDPDDIPQDPFGYFLAWMAVFDLFSNASFKVKSGYIQHLRDLDLIST
RFLPYIFNALGLYGGPRSTFKLDVWAVDEYHVSLYDPDVPVSAALQAAHLYYRGLLIIPS
LIRAWLQDCKDRTLSTTVTTFTAQHYSPVIIATEFARVKSPDAASELEHENLAIKVAGTV
NEITASWAVDEHQLEISLKLPADWPLHPVQVRDSKKVGVEENRWRAWVLGVQQIMWTQNG
SIVDGLSLFKRNVSLHFEGQVECAICYSIISPMDYSLPKKPCKTCKNRFHSTCLYKWFNT
SHSSTCPLCRSDIF
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagggccagaaatcctctgcctcctccggcactcgcaagaaacacgcacgcaaa
gccgcaggcccgcaggagcccaccccgaccaaagacaagcgagacaagggcacgggcaag
ggcaagggcaagaacaaggagccgcgcaagaaagtgtacatccccccgaccaagcccgcg
cccgcgcgccccgacccgctcgacaccctcgggctcgccaaccagctcccgccggagctc
ctcgtcgtcctgcgcagtctaaggaagaaggacgcggtcacaaaggccaaggcgctcgag
gagctgctcggcgcgtgggtggagagggcgctcgggacccgggatgagggcgcggtggcg
gcgacgctcgtgctcatgctgccggtgtgggtccaccacatgcccgcgctcttcctccac
ccctcgcgccgcatccggctgctcgcagccagcgtccactcctcgctcctgcgcatcccg
gacgcgcgcgccgcgctcctcaccttcctcgccgacgccgccccgcccgaccaggccgag
tgcgtgctcggcgcgtggtgcatggccggcagcgacgccgaccggctcgtcgcgcggcac
gcgcgcgcgtcctgggaggactttgtttcccttgccccgccaagtgcgttggcgctggat
gagagcgcgctgctgcgcatgctgcagcgcaccgcgctcgacccgggcgcggtctacctc
tccctcaacccgccgcaggtgagcgtggagcccggcgtcccggggcggaaggccccaccg
aagaggcgggaggaggagccggtgagggcgaagaccgaggacgaggaggagagcgaggac
gaccgcaatgcgcggctgcgcgtcggcgcgctggggggtctgaagtgggtgctaggcctc
gcggagatcctaggcaaccccgccctctggacttcactgtctcacgcgcgcgcggcgccg
tgggtcgacgtgccgagttttgggtgcggccagccggtcgtgcggcgggcggcgtgggcg
ctcgtgcaggccctggtagggcactgggcagaggaggtgaagaacgcggacttgctgggc
gtgctgagtacggtcgtgctgaggtccgcgtgggtggagccggacccgacggtgaggacg
gtgatgtggcagccgctcatgatgttcctcaaagagttcccgcaagcgtggacggtcgat
ggctccaagaccgccgccgacgatgcgtccgaatccgacggggatcacagcgacgaggag
gacggggacagggagcagggcacccccggccccgctcccaccacgccgggcacgtcgcta
gcgtacgacgagttcctgcagttcctccagctcggctgcgcgggctcgccgctgcagggc
tacccgacggtcgtcatcgtgctctccacgctgcccgcttccttcctgagtacgcctacc
gtagaagacgcactgaaggatctgttcacgtccttttgggcggcagtcgacgcgcgcgcg
ctcggcgggctggacaaagccgccgcgcacagggcgttcctctcatctctcctcgagtgc
accgcgttcctcgtccggcgcatcagacaggatcccgcattccgcgatgcgaatgtggat
gcgcatgaagtgcgtaggtggctggtgggggagcaatctgcgagagtgatggaggcgctg
gcgggaggcgggttgagggtggagggggcgggggcgggggcgggggcgctggtggggagg
cacctggaggcgctcgagggcgttgatatagaactgttcagggccgcgtgggcgccggtc
gacgctaccctcgcccgcgtgggcgcgcggttcgcgtgtggtgccctgaaggcgttttgg
gagacgttcggggagggcagtgaggcgcgggcggcggcgcggagggcgattggggaggtt
gcgcggcgcgcggtgggggaggcgatcgacgagactgtccaggcgaatgtcgcgcagctc
gtcgacgctgcgccctcgctgctcctcgcgtacctcacccaccggaacgatcaagcacgc
gccctggaaatctggcgtaggattctggacgtgctctccggcaaggacccgcgcgagctg
gctacgcgcatcgcgcccttcgccagggccggcgcgctcccgtgctactgcgccccggag
gacggcgagctggacgagccgctcacgcggttggtggcgcacgcgtcgggggggagcgtg
gattcggaggcggcgggcgtggtgtgttcggtattgcgcaaccctcagtacttcttgtcg
agcgccgcgcgtgtcgggctggttgagggtttggtggcgacgttcggtgtgcacgtacag
caggcgctgagagatcccgcggccgcggcgtacacgcaggcgtttgagaatttgctgggg
ttgctggaggcggcgttggcgggggatcctgcggtgttgtcgtcatcgacgcttggggtg
gggttgctgcctgatctctgtctgttcgcgtatgtgcttccgacgttctcttcgtccaag
ggtgaggcatactttgagaaagcgagggatctgtggaatggatggtggggccaaagtaca
gaggagtcacgctcggatacccaagctgcgctggttggcaagttgcgcgatattattttg
gatacgcaggttgcggtgacgccggacagtgtcctggatgtgctgtgggatggtatcccg
gggctagacattcaagccgctgatgtattaccggactcggggaccatgctccggatgctc
gaaggcctacctacatatcctgaggacccgagcgccgcagttgtcaacaatctcattcct
cctgcatctcttctgggcgaccgcgtcacctggacgcccgagtatgattccgaggggtat
tcacagtacgggagagttacgactgcgtttgctcgggtgtttgcctcggatcgtcaagca
gccaaagagcatatctgggctctgcaacatcttttggcggcaagcgtctatgccgaagac
caggttcaactttccttggagcgtaacccactgtgtacccgcaaggtgtctagagcaaag
ctgcaagcctttgtgtctagagtgcagtcaatcactgcgtacctcctcgtcccggatgcg
gaagacgggtggcattcaaagatcgtcaacgccgcccaagatccagctatcgaacgaagt
accccgtccactctcaccgcgcatctcatccagtatgcttccgggcacgacaacccacga
gaggcgcgtgtcctgtatgccgcgctccagaccgtcatgagcggtgcaactaaggaagaa
gcagacgaatggataatgctagctcggaaactcgagaagaaggcgccgttgacctcgata
gctctcgtgtcctgcgtgactgcgttcggacctgagccaccacggttagatcgctacagg
aatgagctagctgcgggaattttcggtgtacctgcttcgaaggccaacgacgaagggctc
ttgagtctactgagactcgcggctactgctcccgatccggagtcggacgtggtattcctc
cctcagccgagggctatcaacctcatgaaagcctgtcagcagtgggtcgaatctgacgag
gatatttcggaggatgtcgagagcgcgatgacgctgatattctaccacctggtgccgatc
ttgcaagacgttcctggaggccactgggacttcatttttgatgtcatagagaataacctt
gagaacggctccttcaacgagaattccactcttgtgactctggcgcgtacattcaggctc
atcatcgccatccaagatatagcgacgaccaacaagtcgctccgcgccctatgggacgag
cggcggcaggctgtcctgacgttggtcagagacctaatagcgtcacgcgagagttcacgg
gccccttccacccctcagttaatgtctctggagttggcgatgtcaatcgtccaagatatg
cctgattccctacacgacgcgaagattctaccttcgatgtgtcgcctcatcgtcaatacg
tcatcagaaacgcagaaaatggcgtatcacttgctgcaggagtctagtaggaagtacacg
gaaaacctcgtcattgaagcaggagttgatacagaggctaacgtcaaatgcgagctcccc
atggagctggtagatatccttcagcgatccatctcggacgacgatccagacgatatacct
caggatccatttgggtatttcttggcatggatggccgtcttcgacctcttctcgaacgcg
tctttcaaagtcaaatctggatatattcaacatctgagagacctggatctcatatcgaca
aggttcttgccctacatcttcaatgcgttaggcctctatggtggccctcgctcgaccttc
aagctggacgtttgggcggttgacgagtaccatgtttcactgtacgatccggacgtccca
gtcagtgcagctctgcaagccgcgcacctgtattaccgtggcctgctgattattccctcc
ctcatccgtgcctggctccaagattgcaaggaccgcaccctttctacgacggtcaccacg
ttcaccgcccaacattactctccagtcatcattgccacggagtttgctcgggtcaagtct
cccgacgctgcctctgagttagagcacgagaacttggcaatcaaggtcgctggcactgtt
aacgagataacggcgtcctgggctgtggacgagcaccaattggagatttctctgaagtta
ccggcagactggcccttgcacccagttcaggtaagggactccaagaaggtaggcgtagaa
gagaacagatggcgggcgtgggtgctcggtgtgcaacagattatgtggacgcagaatggc
tccatcgtggacggcctcagcctcttcaagaggaatgtcagcctccactttgagggtcag
gtcgaatgcgcgatttgctattctattatcagtccgatggactacagtctaccgaagaaa
ccgtgcaaaacctgcaagaatcgattccattctacttgtctatacaagtggtttaacacg
agtcactcttcgacatgccccctttgtcggtcagatatcttttga
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integrated database retrieval system
