Gloeophyllum trabeum: GLOTRDRAFT_124000
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Entry
GLOTRDRAFT_124000 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GLOTRDRAFT_124000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gtr03041
]
GLOTRDRAFT_124000
Enzymes [BR:
gtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLOTRDRAFT_124000
Spliceosome [BR:
gtr03041
]
Complex C
Other components
Step II factors
GLOTRDRAFT_124000
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
S1
AAA_22
AAA_30
AAA_19
nSTAND3
T2SSE
AAA_16
GIPC1_GH2
PhoH
nSTAND_NTPase5
ATPase
Motif
Other DBs
NCBI-GeneID:
19301035
NCBI-ProteinID:
XP_007861593
JGI:
Glotr1_1_124000
UniProt:
S7QPH6
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MAEDDIYNLEFLSLVNRITQEVNNYTGLNDATIAEFVIDLHDSSSSLPDFKTKLKENGAD
FPESFIENVDRLILTMHPKHRKKSAPTGDGADGTGDKENLDEKDKQRRLFPGLAKQDQEW
EPSIQKDVLMKEVDDMMAQFESTAKRPRPVERERSPKRQRRSSRSRSPSRQRSDSPPRGR
GYDRRGDTHGRNGDRGRRALDERPVLYKIYDGRVSGLKEFGAFVQLEGVAGRVEGMVHVS
NIQVGMRANAAADLLRRGQNVKVKVMSVAGNRVGLSMKDVDQTTGRDLTPHLRIKSEAEM
EEERQRAARGASSGANAVPVGAHTEPVRSAKRLTSPERWEIKQLISSGALDPSEYPDLDE
EFTNPLARAEVEEELDVEVKEEEPPFLAGQTKRTLDLSPVKIVKAPDGSLNRAALAGASL
AKERRELRQQEANEQADSEARDFSAPWLDPMAKEQERMFAQDLRGNIKGQKAGEVPQWRA
ATFNKATTYGEITQLSLQEQRKSLPIYKLRDALLQAIREHQVLIVVGDTGSGKTTQMTQY
LAEDGYAERGRIGCTQPRRVAAMSVAKRVAEEVGCRLGQEVGYTIRFEDCTSPETKIKYM
TDGMLQRECLIDPLVSSYSVIMLDEAHERTIATDVLFGLLKKAVQRRPDLKLIVTSATLD
AEKFSKYFFGCPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLSEPPGDILLFLT
GQEEIDTACEILFERMKALGPKVPELIILPIYSALPSEVQSRVFEPTPPGARKVVIATNV
AETSLTIPGIYYVIDPGFAKQNAYDPRLGMDSLIVMPISQAQARQRAGRAGRTGPGKCYR
LYTEAAYRNEMLPNSIPDIQRTNLAHTILMLKAMGVNDLLSFDFMDPPPAQTMLQAMETL
YALSALDDEGLLTRLGRKMADFPMEPKESKMLIASVELGCSEEILSIVAMLSVQSVFYRP
KDKQGQADSKKAKFHQPEGDHLTLLTVYNGWKASNFSNPWCYENFIQARSMRRAQDVRKQ
LLGIMDRYVVYKHDIISAGRDYNRVRKAICSGFFRNAAKKDPQEGYKTLVEGTPVYIHPS
SALFNRAPEWLVYHELVLTTREYCHNVTAIEPKWLVEVAPQFFKVSDPTKISKRKKQEKI
EPLFNKYEKPDEWRLSKVKRSARSSQTFG
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagacgacatatacaacctcgagttcctctctctagtaaataggatcacccag
gaggtcaacaactataccggtctaaatgatgcaaccattgccgagttcgtaatcgaccta
catgactcgtcgagcagtcttccggacttcaagaccaaactcaaggaaaacggcgcggac
tttcctgaatcattcattgaaaatgtcgatcgtctgattcttaccatgcatccgaagcat
aggaagaagtctgcgcccacaggtgacggagctgatggcaccggtgacaaggagaacctc
gatgagaaggacaagcagaggcgtttgttccctggtctggccaagcaggatcaagagtgg
gagccctcgatacaaaaggatgttctaatgaaggaggtggacgatatgatggcccagttc
gagagtactgcgaagaggccccgacctgtggaacgcgagagatctcccaagcgtcagaga
cggtcatcgcgttcacgctcaccatcaagacaacgtagtgatagtcctcccagaggtaga
ggctatgacagaagaggggatacacacggtcggaatggcgatagaggacggcgtgcgctg
gatgaaaggccggtgctgtacaagatctacgatggacgtgtgtccggtctcaaggagttt
ggtgctttcgttcagctggagggcgttgcaggtcgagtggaaggtatggtgcatgtctcg
aatatccaggttgggatgcgtgccaacgcagccgctgacttgctgcgacgtgggcagaat
gtcaaagtaaaggtcatgagcgtggctggcaatcgagtggggctatccatgaaggacgtg
gatcaaactactggtcgcgaccttactccccatttgcgtatcaagtctgaagctgagatg
gaggaggagcgacaacgcgcggctcgtggggcatcttctggcgctaacgcagttccagtg
ggagcacataccgagccggtgcggtctgcgaagcgcctgacgtctccagagcgatgggag
atcaaacagctcatctcatctggtgccctcgacccatctgaataccctgatctcgacgaa
gagttcacgaatcctctcgctcgtgctgaagtggaggaagagttggacgtcgaggtcaag
gaagaggagccgccgttcttggcgggacagacgaaacgaacgctggacctgagtccggtt
aaaatcgttaaagcgccggatggctcactcaacagggctgcactggctggcgcttcccta
gctaaagaacgtcgtgagttgagacaacaagaagccaacgaacaggccgactctgaagct
cgggacttcagtgctccttggctggaccctatggccaaagagcaggagaggatgttcgcg
caggatttacgtggtaatatcaaaggccagaaagcgggcgaggtccctcagtggcgggcc
gctacttttaacaaggctacgacgtacggtgaaattacgcagttgagtctgcaagaacaa
aggaagagtttgcccatttacaaactgcgggacgcccttcttcaagctatccgagagcat
caagtcctaattgtcgtcggcgacaccggttcagggaagactacccaaatgactcagtat
ctcgcggaggatgggtatgccgagaggggtcggataggctgtacgcaaccgcgtcgtgtg
gccgcaatgtctgttgccaaacgtgtagcggaggaagtcggatgccgtctcggccaagag
gtcggatacactatccgtttcgaggactgcacaagcccagagaccaagatcaaatatatg
actgatggtatgctgcaaagagagtgtctaatagaccctctggtcagctcatactccgtt
attatgctggacgaggcccacgagcggacaattgctaccgatgtattgtttggtctcctc
aagaaggctgttcaaaggcgtcctgacctcaagttgattgtaacgtctgccactctggac
gccgagaagttttcgaagtacttcttcggttgtcccatcttcacaatccccggacgaacg
tatccagtggagatcctctacaccaaggagcctgagactgactacctcgacgcttccctc
atcactgtcatgcagatccacctttccgagcctcctggtgatatcttgctgttcctgacg
ggtcaggaggagattgatactgcatgcgaaatcctattcgaacgcatgaaggccttagga
ccaaaagtgcccgagctcatcatcttgcctatctactctgccctcccctctgaggtgcaa
tcaagggtattcgagcccacacctccgggagctcgaaaggttgtcatcgcgaccaacgtc
gcggagacgagccttaccattccaggcatctactatgtgatagaccctggattcgcgaaa
cagaatgcttacgatcctcggctgggcatggactctttgatcgttatgcctatatcgcag
gcgcaagcccgtcagcgagccggtcgtgcgggtcggacaggtccaggaaaatgttatcgc
ttgtacaccgaggcagcataccgcaatgaaatgctgcctaactccattccggatatccaa
cgaaccaacctcgcccatacaatcctaatgctgaaagctatgggtgtgaacgaccttctt
agcttcgatttcatggacccgcccccagcgcagacgatgttgcaggccatggagacgctg
tatgcgctatctgcattagatgatgagggtttgctaacccgactcggtcgtaagatggct
gatttcccgatggagcctaaggagtctaagatgcttatcgcctctgtcgagctcggatgc
tcggaggagattctgtccatcgttgctatgctttcggttcaaagcgtcttctaccggcca
aaggacaaacagggtcaagcggactcgaagaaggcgaagttccatcagcctgaaggggac
catctaacactgctcactgtatataacgggtggaaagcaagcaacttttccaacccgtgg
tgttatgagaacttcatccaggcgcgaagtatgcgtcgagctcaagatgtacggaagcag
ttattaggaatcatggatcggtatgttgtgtacaagcatgatattatatccgctggtcgc
gattacaaccgggtccggaaagccatctgctcaggattcttccgcaacgcggctaagaag
gatcctcaggaggggtacaaaactctggttgaaggcacacccgtctacattcacccatca
tctgccctgttcaaccgggcgccggagtggcttgtataccacgagctggtactcaccacg
agagagtactgccacaatgtcactgcgatagagcccaagtggcttgtggaagttgcacca
caattcttcaaggtctcagaccccacgaagattagcaaacggaagaagcaggagaagatt
gagcctctgttcaataagtacgagaaaccagacgagtggcggttgtccaaggtcaagcgg
agtgcacgctcgagtcagacgtttggttga
DBGET
integrated database retrieval system
