Gloeophyllum trabeum: GLOTRDRAFT_138171
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Entry
GLOTRDRAFT_138171 CDS
T03130
Name
(RefSeq) WD40 repeat-like protein
KO
K14829
pre-rRNA-processing protein IPI3
Organism
gtr
Gloeophyllum trabeum
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gtr03009
]
GLOTRDRAFT_138171
Ribosome biogenesis [BR:
gtr03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
GLOTRDRAFT_138171
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_Prp19
WD40
WD40_WDHD1_1st
EIF3I
Beta-prop_EML
Beta-prop_WDR75_1st
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
WDR54
Beta-prop_RIG_2nd
Beta-prop_HPS5
PEP5_VPS11_N
Beta-prop_IFT140_1st
Beta-prop_VPS8
Beta-prop_Vps41
NBCH_WD40
WD40_RFWD3
Beta-prop_IFT140_2nd
WD40_alt
DUF7310
Beta-prop_IFT122_1st
Beta-prop_WDR19_2nd
DUF4349
DUF6752
Beta-prop_WDR35_2nd
Motif
Other DBs
NCBI-GeneID:
19303920
NCBI-ProteinID:
XP_007865173
JGI:
Glotr1_1_138171
UniProt:
S7Q8Y1
LinkDB
All DBs
Position
Unknown
AA seq
512 aa
AA seq
DB search
MKLHEVILCAASTSTSNAGPGLIAVHDIQSGSTLASFKQTNTSSRCLAVTESRDGLGGVM
FAAQHEKSLLNVYNFQKDQLALKIVLPEKLTCCASDHRGQFFAGGTAQGRIYIWEISSGI
LYNAWDAHYRQVNVLRFTPDGAALVSGSEDSGVSVWEVSRLLDDNLQNELPVSYCTFTDH
TLPVTDLVCGVGPFPTSRILTSSVDHTVKLWDLGARTLLTTFHFPQPISHLAWEPTERVF
FAASSGDDGTIYQMNLFKQTRAGKNAIVEAIGGGGATDIVRIGDDDGSAPKKMSIQVDQP
ITALCISLTSSLLVVGTSLGTIQTYDIPSHQPLRSINTHKGLAITHLSTMIRPPDLVGHV
NIQLGLSSGVGVSGAAGQGEVISLRSVVPFDRTRDPRKREAREVGIILPVQGDVPYIDPA
EYPEDELFRDHAYFTQQMVPAASGANGVGAVSLQSRVAELETEVQKLRDQLGKAKNVNDV
MWETVVKKVIKEGKGGGDADASEEPKRKRGRT
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgaaactacacgaagtcatcttatgtgcagcgtcaacgtcgacttccaatgcagggcct
gggttaatagccgtgcatgatatccagtcaggttccaccttggcctccttcaagcagacc
aacacctcttcacgatgtcttgctgtcactgagtctcgggatggactaggcggtgttatg
tttgccgcgcaacatgaaaagtctctcctcaacgtctataacttccagaaagaccaactc
gctctaaagatagttttgccagagaagttgacatgctgtgcgagtgatcataggggacag
ttctttgctggtgggacagcccagggacggatatacatctgggagatatcatccgggata
ctatataatgcatgggatgcccactatcgccaagttaatgtccttcgtttcaccccagac
ggagcggcactcgtctcggggagtgaagactcgggagtgagcgtatgggaagtatccagg
ctgctagatgataacttgcaaaatgaactgccggtatcttattgcacattcaccgaccac
acactgcccgtcaccgatcttgtctgcggagttggaccgttcccaacatctcggatactc
accagctcagtcgaccatactgtgaagctttgggacttgggtgctcggacactcctcaca
acattccatttcccccaacccatatctcatcttgcttgggagcccaccgagagggttttc
tttgccgcatcatcgggtgacgacgggaccatctatcaaatgaacctattcaagcagacg
agggcagggaagaacgccattgtcgaagcgatcggcggcggaggtgcgacagacatagta
aggataggcgacgatgacggcagcgcgcctaagaagatgtccatacaggtcgaccaacca
ataaccgccctctgcatctccctcacgtcgagtctcctcgtcgtcggtacctccctcggc
acgatccaaacatacgacatcccctcgcatcaacccctacgctccataaatacccacaag
ggcctcgccatcacccacctgagcacgatgatacggccgcccgacctggtcgggcatgtc
aacatccagcttggcttgagtagcggcgttggcgtgagcggcgcggcagggcagggcgag
gtgatcagcctgaggtctgttgtgccgttcgatcggacgagggatccgaggaagagggaa
gctcgggaggttgggataatcctcccagtacagggcgatgttccctatattgacccagca
gaataccccgaagacgagttattccgggaccatgcatattttacgcaacagatggtgcct
gctgcgagtggtgccaacggcgtcggtgccgtctcgttacagtcgcgcgtcgcagagctt
gagacggaggtgcagaagctaagggatcagcttgggaaagcaaaaaatgtgaacgacgtc
atgtgggagacggtggtcaagaaggttattaaggaagggaaagggggtggggacgcggat
gcgtcggaggagccaaagcgcaagagaggccgcacttga
DBGET
integrated database retrieval system