KEGG   Gloeophyllum trabeum: GLOTRDRAFT_30030
Entry
GLOTRDRAFT_30030  CDS       T03130                                 
Name
(RefSeq) Sm-like ribonucleo protein
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
gtr  Gloeophyllum trabeum
Pathway
gtr03018  RNA degradation
gtr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gtr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GLOTRDRAFT_30030
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GLOTRDRAFT_30030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gtr03019]
    GLOTRDRAFT_30030
   03041 Spliceosome [BR:gtr03041]
    GLOTRDRAFT_30030
Messenger RNA biogenesis [BR:gtr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GLOTRDRAFT_30030
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GLOTRDRAFT_30030
Spliceosome [BR:gtr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GLOTRDRAFT_30030
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 19305305
NCBI-ProteinID: XP_007860167
JGI: Glotr1_1_30030
UniProt: S7QP77
LinkDB
Position
Unknown
AA seq 127 aa
MDESTPPPPAEGSGSPPPPPPAAPTTVSGSPTDFLKGVVGKRVVVRLTSGVDYRGVLSCL
DGYMNIALEQTEEHVNGRITNRYGDAFIRGNNGAYVSPLSRKHVFLITLKWLSLFFAVLY
ISAAEPI
NT seq 384 nt   +upstreamnt  +downstreamnt
atggacgaaagtacacctccccctcctgcagagggctctgggtcgccgccgcctccaccc
ccagcagcgccgacgacggtctctggatccccgacagactttttgaagggtgtcgtaggc
aagcgcgttgtagtgcgcctgacatcaggcgtagactatcgtggtgtactctcttgcctt
gacggctacatgaacatcgcgctcgagcagactgaggagcatgtcaatggccgtataacg
aatcgatacggggacgcgttcatccgaggaaacaatggtgcgtatgtttcccctttgtct
agaaagcacgtcttcctcattaccctaaaatggttgtctttgttctttgcagtgttatat
atctcagcggcagagccaatataa

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