Gloeophyllum trabeum: GLOTRDRAFT_31741
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Entry
GLOTRDRAFT_31741 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03020
RNA polymerase
gtr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GLOTRDRAFT_31741
09124 Replication and repair
03420 Nucleotide excision repair
GLOTRDRAFT_31741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtr03021
]
GLOTRDRAFT_31741
03400 DNA repair and recombination proteins [BR:
gtr03400
]
GLOTRDRAFT_31741
Enzymes [BR:
gtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GLOTRDRAFT_31741
Transcription machinery [BR:
gtr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
GLOTRDRAFT_31741
DNA repair and recombination proteins [BR:
gtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
GLOTRDRAFT_31741
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
MRNIP
SSXT
Motif
Other DBs
NCBI-GeneID:
19305410
NCBI-ProteinID:
XP_007860272
JGI:
Glotr1_1_31741
UniProt:
S7S5X3
LinkDB
All DBs
Position
Unknown
AA seq
1218 aa
AA seq
DB search
TQDPYAYDDPNYGVEEEEDEYEEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQE
LVDENSDLILDQENQHTGHEADSTRRYEIKFGQIYLSRPTITEADGSVVPLFPQEARLRN
LTYSSTLYVDMKKRVLTSREDPDNPGETIWEPERGEVPEDTQKVWIGRVPIMLRSTFCIL
HDLQDQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIR
SAVEKGGKTISQFQVKMYHRNQERSLGSVMKATIPYIKVDIPIWVVFRALGVISDRDILE
HICYDMQDLQMLEMLKPCIDDGFVIQDREIALDFIGNRGTTTGLSRERRLRYAQEILQKE
MLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRM
LFRKLTKDVYRYLQKCVETHKEFNLSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGV
SQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNL
SLMACISVGSLSAPVIEFLEEWGLESLEENAHSATPCTKVFVNGVWMGVHRDPANLVKTI
KKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHVRWLNQGEN
DDGEPWKWDQLVKNGIVELLDAEEEETVMISMTPEDLENSRLQSAGIDPHANEGDFDPSA
RLKAPTHGHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLV
RMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID
RGLFRSIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVNG
DDIIIGKTAPIPPDSEELGQRTRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVR
VRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLV
ECLLSKVATLIGNEGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYL
GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFL
KERLFDASDAYRLHVCDLCGLTAIANLKKQTFECRACKNKTAISQLYIPYAAKLLFQELQ
SMNIAARLYTVSTGRIRD
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
acgcaagatccctatgcgtacgatgacccaaactacggtgtggaggaagaggaggacgag
tacgaggagataacccaggaggattgctggacggtcatctcctccttctttgagcagaaa
ggtctcgtgcgccagcagctcgactcgttcgacgagttcgtccagaacacgatgcaggag
ctcgtcgacgagaactcagacctcatcctcgaccaggagaaccagcacaccggtcacgag
gcggactcgacgcggcggtacgagatcaagttcgggcagatatacctgtcgcggccaacg
attaccgaggcggacgggtcggtggtgccgctgttcccgcaggaggcgcgtctaaggaac
ctcacctattcgtcgactttatacgtggatatgaagaagcgggtgttgacaagtagggag
gacccagataatcctggggagacgatatgggagccggagcgtggtgaggtgccggaggat
actcagaaggtctggattggcagggttcccatcatgctgcggtcgacattctgtatcttg
cacgacctccaagaccaggatttgtacgacctgaatgaatgtccgtacgactctggagga
tactttattatcaacgggtcggaaaaggtactcatcgcccaggaacgtatggctacgaat
catgtctacgtctttgcgaaggcgcaaccctcccctatcagcttcttggctgaaatccgt
agtgctgtggagaagggcgggaagacgatcagtcagttccaggttaagatgtatcaccgg
aaccaagagcgatcccttgggagtgttatgaaggccaccattccttacattaaagtcgat
atccctatttgggttgtcttccgcgctctgggcgtcatctctgaccgcgatatactcgaa
catatctgctacgatatgcaagacttgcagatgctcgaaatgctgaagccttgcattgac
gacggcttcgtcattcaggatcgggagattgcattggacttcataggtaaccgtggtacg
acgactggtctctcccgggagcgacggttgcggtacgcgcaggaaatcctgcagaaggag
atgctgccgcatgtgtccatggctgaaggctctgagtcgaagaaggcgtacttctttggg
tacatgatccatcgactgctccttgctgccctggagcgtagggagctggatgaccgtgat
cactttgggaagaaacggcttgacctggccggccctctgctggctaacctgttccggatg
ctcttcaggaagttgacaaaggatgtctaccggtacttacagaagtgtgtggagacacac
aaagagttcaatctctcgcttgctgttaagcacaacaccatcacaaatggtctcaaatac
tcattggcaaccggtaactggggcgaccaaaagaagtctatgtcctcgaaagctggtgtc
tcgcaagtgttgaatcgttacacatatgcatccacgctctctcatctccggcgatgcaat
acgccattgggaagagaagggaagatcgcgaagcctcgccaattgcataatacccactgg
ggcatggtgtgtccagcagaaacgccggaaggccaggcttgcggccttgtcaagaactta
tctctcatggcgtgtatatcggtcggttccctgtctgcgcctgtcattgagttcttggag
gagtggggtctggagtccttggaagaaaacgcgcactccgcgacgccttgcaccaaggtc
ttcgttaacggtgtctggatgggcgttcatcgcgatcccgctaacttggttaagaccatc
aagaaactgcgtcggaaggacgatattagtcccgaagtctcggttgtgcgcgatatccgt
gagcgcgagctgcggctatatactgatgcaggccgtgtctgccgaccgctcttcatcgtc
gagaaccagcagcttgctctgcagaagaagcatgtcaggtggctcaaccagggagagaat
gatgacggcgaaccatggaaatgggatcaactcgttaagaacggtattgtggagttgctg
gatgctgaagaagaggagactgtgatgattagtatgacgcccgaggaccttgagaactcg
agacttcagtcggctgggattgaccctcatgccaatgaaggggacttcgacccgtctgct
cgactgaaggccccgacacacggacacacatggacacattgtgagatccatcctagcatg
attctcggtgtttgtgctagtatcatcccgttccccgaccataaccagtcccctcgaaat
acctatcaatcagccatgggtaaacaagctatgggtatctatcttaccaacttcctggtt
cgcatggatactatggccaatatcctctactatcctcaaaagccgctggctacgactcga
tccatggaatacctgcggttcagggagttgcccgccggccagaatgccattgtggcaatc
ttgtgttatagtgggtacaaccaggaagactccgtcatcatgaaccaaagttcaatcgat
cgtggtcttttccggagtatctattaccgcagctacatggacctcgagaagaagagcgga
gttcagcagctggaggagttcgagaagcctacacgcgatacaacactgcgcatgaagcat
gggacatacgacaagatcgaggatgatggactgattgctccaggtactggtgtcaacgga
gacgacatcatcattgggaagactgcgccaattcctcctgatagcgaggagctagggcag
aggactcggtcgcatactcgacgcgatgtttccactgctttgaagagcacggagagcggt
atcgtggatcaggttctcatcactaccaactcggaaggccagaagttcgtcaaggtccgg
gttcggtccacccgtattccccagattggcgataagtttgcttctcgtcatggtcagaaa
ggtaccatcggtatcacgtatcgccaggaagacatgccattcaccgctgaaggtatcaca
ccggatatcattattaatccccacgctattccctctcgtatgactatcggacacttggta
gagtgtctcctttcgaaggtcgcgacccttattggcaatgaaggtgacgcgacacctttc
actgatctgacggttgagtccgtctcgacgttcctccggcaaaaggggtaccagtcaaga
ggcctggaagttatgtatcatggtcatactggtcgtaaactccaagcacaagtttacctt
gggccgacttactatcaacggctgaaacacatggttgacgacaagatccattcgcgtgcg
cgaggccctgtacagatcctcactcggcaacccgtggagggtcgtagtcgcgatggtggt
ctgcgattcggagagatggagcgtgactgtatgatttcgcatggaatagctggtttcttg
aaggagcggctcttcgatgctagtgacgcttaccgtttgcatgtctgtgatttatgcggt
ctaaccgcgattgccaacctgaaaaagcaaacgttcgagtgccgcgcgtgcaagaacaag
actgccatctcgcaactatacatcccatacgccgcaaaactgttgttccaggaattgcag
agcatgaacatcgctgcgcgcctgtacaccgtctcgactgggcggatacgggactaa
DBGET
integrated database retrieval system