Gloeophyllum trabeum: GLOTRDRAFT_53796
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Entry
GLOTRDRAFT_53796 CDS
T03130
Name
(RefSeq) WD40 repeat-like protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03040
Spliceosome
gtr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GLOTRDRAFT_53796
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
GLOTRDRAFT_53796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gtr03041
]
GLOTRDRAFT_53796
04121 Ubiquitin system [BR:
gtr04121
]
GLOTRDRAFT_53796
03400 DNA repair and recombination proteins [BR:
gtr03400
]
GLOTRDRAFT_53796
Enzymes [BR:
gtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
GLOTRDRAFT_53796
Spliceosome [BR:
gtr03041
]
Complex B
Other components
Prp19 complex
GLOTRDRAFT_53796
Complex C
Prp19-CDC5 complex
GLOTRDRAFT_53796
Ubiquitin system [BR:
gtr04121
]
Ubiquitin ligases (E3)
U-box type E3
GLOTRDRAFT_53796
DNA repair and recombination proteins [BR:
gtr03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
GLOTRDRAFT_53796
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
EIF3I
U-box
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_EIPR1
zf-Nse
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Cep57_MT_bd
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
19306951
NCBI-ProteinID:
XP_007860419
JGI:
Glotr1_1_53796
UniProt:
S7S555
LinkDB
All DBs
Position
Unknown
AA seq
509 aa
AA seq
DB search
MFFCAISGEVPQDPVVSAKSGHVYERRLIQKYINENGTDPVTGEKLEDSDLIAVKASPNA
APPRAPAQTSIPALLQTLQNEWDALVLETFALKQQYNSTRQELSYSLYAQDAATRVVARL
MKERDAARDALASVQASMGIAPSAPSGGDVEMGDEGAGGLPADIVSQIDETHQTLSAARK
KRKPPANYATPAEVKTFKAKHTIPSLHSASPAGVTALAVSRVDPSHFLTGGNDKIVQLYD
RDTDKVLATLKGHTKKVNHVAFREKDGEPTLLISGGADKMAKIWSHDATSGEYLPKSTIR
SHKGEITGLAVHPTSTILALASHDKSYSLHDLTNFKQVYFSAPADEPLTSLSIHPDGMLL
AVGTPASTIQIYDIRSGGIAATLTPEGSTPFTVHTTSFSENGYHLLAPDSLSSMAVWDLR
KPRIAHSIALGDDFKINKVTYDYSAQLLGVAGSEGARVYAHKSWEELVRFEEGGEVSDIV
FGHQGKEIWGVTGREVRVWGSTDESMETA
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgttcttctgcgccatctctggtgaagtcccccaggacccggtggtctctgcgaaatcc
gggcatgtgtacgagcggcgtctcattcagaagtatatcaacgaaaatggcacggatcct
gtgacaggagagaagttggaggactccgaccttattgcagtcaaagctagccctaatgct
gctccgccacgagcacccgcgcagacgtccattcctgccctactgcagaccctccaaaat
gaatgggacgcgctcgtgttggagacctttgctctcaaacaacaatacaactcgacgcgt
caggagctcagttactctttatacgcgcaagatgcagctactcgtgttgtagcgcggtta
atgaaagagcgtgacgctgccagggacgcccttgccagcgtacaagcctcaatgggcatt
gcgccgtcagcgccgtcaggtggagacgttgagatgggcgatgagggtgcaggaggcctt
ccagcagatatcgtgtctcagattgacgagacccaccaaactctgtccgccgcccgcaaa
aagcgcaagcctcccgcgaactacgccactcctgctgaagtcaagaccttcaaggctaag
cacaccattccctctctccactctgcctcccctgctggtgtgactgccttggccgtttcg
cgtgttgacccctcacacttcctcactggtggtaacgataaaattgttcagctctatgac
agagatacggacaaggtcttggccaccctcaaaggtcacaccaagaaggtcaatcatgtc
gcattccgagagaaggacggcgagcctacgctattgatatctggcggagcggacaagatg
gcgaagatctggtcacatgacgctacgtctggcgagtatttgcccaagtctaccatccgg
tctcacaaaggcgaaattactggtctggctgtacaccccacgtcaactatcctcgccctt
gcttcccacgacaagtcatattcactccacgacttgaccaacttcaagcaagtttacttc
tccgcaccggcggatgaacctctcacgtcgctttccatccatcccgacggcatgcttctg
gcagtcggcacgccagcatctaccatccaaatatacgatatacggtccggcggtattgct
gctacactcacgccggagggtagcacaccgttcacggtacacactaccagcttctctgaa
aacggataccacctgcttgcgccagactccttgtcatccatggctgtctgggacttgcgt
aagcctagaattgcgcactcgatagccttgggcgatgatttcaagatcaacaaggtgact
tacgattacagtgctcaattgttgggtgtggcagggagcgagggtgcgcgggtatatgca
cacaagtcatgggaggagcttgtcaggtttgaggagggcggcgaggtatccgacattgtc
ttcggccaccaaggcaaagagatatggggggtcacaggaagagaggtgcgggtttgggga
tctactgacgagagcatggagactgcttag
DBGET
integrated database retrieval system
