Gloeophyllum trabeum: GLOTRDRAFT_54808
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Entry
GLOTRDRAFT_54808 CDS
T03130
Name
(RefSeq) DEAD-domain-containing protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03013
Nucleocytoplasmic transport
gtr03015
mRNA surveillance pathway
gtr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GLOTRDRAFT_54808
09122 Translation
03013 Nucleocytoplasmic transport
GLOTRDRAFT_54808
03015 mRNA surveillance pathway
GLOTRDRAFT_54808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_54808
03041 Spliceosome [BR:
gtr03041
]
GLOTRDRAFT_54808
03009 Ribosome biogenesis [BR:
gtr03009
]
GLOTRDRAFT_54808
03012 Translation factors [BR:
gtr03012
]
GLOTRDRAFT_54808
Enzymes [BR:
gtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GLOTRDRAFT_54808
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GLOTRDRAFT_54808
mRNA cycle factors
Stress granule specific factors
GLOTRDRAFT_54808
Spliceosome [BR:
gtr03041
]
Complex C
Other components
EJC/TREX
GLOTRDRAFT_54808
Ribosome biogenesis [BR:
gtr03009
]
Eukaryotic type
90S particles
Helicases
GLOTRDRAFT_54808
Translation factors [BR:
gtr03012
]
Eukaryotic type
Initiation factors
eIF-4
GLOTRDRAFT_54808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
TniB
Motif
Other DBs
NCBI-GeneID:
19307006
NCBI-ProteinID:
XP_007861849
JGI:
Glotr1_1_54808
UniProt:
S7QIJ6
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MSGLNAGDEKLVFESSEAVPVVSTFDDLGLKEDLLRGIYAYNFEKPSAIQQRAILPIIQG
RDVIAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRAANFTVSSMHGEMPQKE
RDAIMSEFRAGSSRVLITTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKG
VAINFVTVDDVKILRDIEQFYSTQIDEMPVNAAELI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtcttaacgctggagacgaaaaacttgtgttcgagtcctctgaggccgtcccg
gtcgtctctactttcgacgaccttggtctgaaggaggatcttctccgaggcatctatgcg
tacaacttcgagaaaccctcggccattcagcaacgcgctatcttaccgataatccaaggg
cgggacgtcattgctcaagcgcagtcgggaactggaaaaaccgcgaccttctctatctca
atcttgcagtccatcgacgtgacggtccgggagacgcaagcactcgtgctgtcacctacg
cgtgaattagccactcaaattcagtccgttgtcctcgctctgggcgactacatgaacgtt
cagtgtcacgcctgcatcggcggtacgtccatcggagaggatattcggaaactggagtat
ggtcagcatgtggtgtccggaacacccggacgtgtattcgacatgataaggaggcggagc
ttgcggacgcggaacatcaagatgctcgtccttgacgaagcggacgaactattgaacaaa
gggttcaaggaccaaatatacgacgtttatcgatacttaccccccgctactcaagttgtc
ctcctcagcgctaccctcccgtacgacgtgctggagatgaccacaaaattcatgacggac
cccatccgtattctcgtgaagcgtgacgaacttacgctagagggtatcaagcagttcttc
gtggctgtggagaaggaggactggaagttcgacacgctgtgcgacttatacgacacgtta
acgatcactcaagctgtcattttctgcaacacacggcggaaagtcgactggctaactgaa
aagatgcgagcggccaacttcacagtgtcatctatgcacggagagatgccccagaaggaa
cgagacgcgatcatgtcagagttccgcgcgggatcatcacgtgttttgataacaacggac
gtttgggctcgcggtatcgatgtgcagcaagtatcgttggttattaattatgatcttcct
tcaaatcgcgaaaattacatccaccgcattggccgttctggtcgtttcggaaggaagggt
gttgccatcaacttcgttacggtcgatgatgtgaagattctgcgggacatcgagcaattc
tacagcacacaaattgacgagatgcccgtcaacgccgcagaattaatctga
DBGET
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