Gloeophyllum trabeum: GLOTRDRAFT_55502
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Entry
GLOTRDRAFT_55502 CDS
T03130
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GLOTRDRAFT_55502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtr03021
]
GLOTRDRAFT_55502
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_55502
Transcription machinery [BR:
gtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GLOTRDRAFT_55502
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
GLOTRDRAFT_55502
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
Pfc11_Clp1_ID
Motif
Other DBs
NCBI-GeneID:
19307048
NCBI-ProteinID:
XP_007861890
JGI:
Glotr1_1_55502
UniProt:
S7RX75
LinkDB
All DBs
Position
Unknown
AA seq
643 aa
AA seq
DB search
MSWNTMSLYPPSTSYGQMPFPQQGYVHRGPPPVAPQYQYQPPPPVYYMDPTSFREDYLQR
LSMLNVNSRPLIQSLSMIAQEYSRWAEIVAQCIETHIRRASPWMKLPAFYLLDAISKNVY
EPYARHFTPFVTPLFLETYEQVDQNTRSKMEEMLLTWRTGAPNGKELFGIGPQVSIERAI
WGGGDSSYGADTSRTGRGSAPAHVSKAQVLSELDFTMSQRERALQQNPYDATAQTHVNVL
RQLRSVVEAGVSQDELREVLNQLRALSRSIPPPPAAAPQAAPYQSPPPPPTIPSYPPAPA
SYPSAPNYSAPPSQPSYPPQPSYTPPQQESKPWPSALPPASALLHASAAPPTAGPSSLPL
GNIENLFSALVKAGVVSSNNGTPTGAGATAKVEDVKPDEVDPARRASREYRKAILSQKIR
LTNADITRQRPDVVSFLYDRLPSQCKQCGLRFADNPIGKKKMQDHLDMHFRQNRKASQNV
GRGHSRSWFVGVEDWIHEVADSKGKGRADRRMNAKEAAAAAAKEEEAALRASHVVVPPGD
EAKPISCPICKETMQSEFLEDEEEWVWRNAVKKDDRIYHATCHAEAMSSNRLAALLRSEK
ASRSRSVTPDTLALRTTPPRNSLSSTDGSVRVPVSPSTQPRVA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgagttggaacacaatgtccctctaccctccaagcacttcctacggtcagatgcccttc
cctcaacagggatacgtgcatcgtgggccacctcccgtggctcctcaatatcagtatcag
ccaccgcctcctgtctactacatggaccccacttcgtttcgagaggattacttgcagcgt
ctatcgatgctcaacgttaattcgagaccactgatccagagtctttccatgattgcacag
gagtatagtcggtgggctgaaatcgtggcgcaatgcattgagacgcatatacgaagggct
tccccttggatgaagttacccgccttctacctcctcgatgccatctcgaagaacgtctac
gagccgtatgctcgccatttcacacccttcgttactcccttgttccttgagacctatgaa
caggttgaccagaacacgcgcagcaagatggaagagatgttgctgacctggcgaacaggc
gcgcccaatggcaaggaacttttcggcatcggacctcaagtcagcattgagcgggctatc
tggggtggcggcgactcgagctacggtgccgatacctctcggacagggcgaggatccgct
cccgcgcatgtctccaaagcccaagttctcagtgaactcgattttaccatgagtcagagg
gagcgcgcactgcagcagaatccttacgacgcgactgctcagacgcatgtcaatgtcttg
cgacagttacgtagtgttgtggaagctggcgtgtcccaggatgaactccgcgaggtgttg
aatcagttacgggcgctctcaaggtcaatccctccccctccggcagcagctccccaagca
gcaccgtatcaatcccctccacctccaccgacgatcccatcctatcccccagctcctgct
agctatccgtcggccccgaattatagcgcgcctccatcccagccgtcgtacccgcctcaa
ccatcgtacacgccgcctcagcaggagtcgaaaccgtggccttcggctctacctccggct
agcgctctgctccatgcttccgccgctccccctacagcgggaccttcttcgctaccctta
ggcaacatagaaaatctgttcagcgctcttgtgaaggcaggtgtcgtctcgtcaaacaac
ggtaccccaactggtgccggtgccactgcgaaggtcgaggatgtaaaacccgatgaggta
gatcccgctcgtcgagcctcacgggagtacaggaaagctattttaagccagaagatccgg
ttgaccaatgcggacatcactagacaacgtccggatgtagtgtcattcttgtatgaccgt
ctgccatcacagtgcaaacaatgtggtctgcgcttcgcagacaatcctataggcaagaag
aagatgcaagatcatcttgacatgcactttagacagaaccgtaaggcgagtcagaatgta
ggacgcggacacagtcgtagctggttcgttggagtggaggactggatacatgaagtggcg
gatagcaagggcaagggtcgtgccgatcgacgtatgaatgctaaggaagcggctgcggct
gctgcaaaggaggaagaggcagctcttcgcgcgtctcacgtggttgtccctccgggtgac
gaggcaaaacccatatcatgtccgatctgtaaggagactatgcagtctgagttcctcgaa
gatgaggaagaatgggtctggcggaatgcggttaagaaagacgaccgaatctaccatgca
acctgtcacgcggaagctatgtcatccaacagactggcggctttgctgcgcagtgagaag
gctagtcggagccgttcagttactccggatacattagctctgcggacaacgcctcctcga
aactctctgtcgagcaccgacgggagtgtaagagttcctgtctcgccttcaacacagccg
agagtggct
DBGET
integrated database retrieval system
