Gloeophyllum trabeum: GLOTRDRAFT_56420
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Entry
GLOTRDRAFT_56420 CDS
T03130
Name
(RefSeq) replication factor-a protein
KO
K07466
replication factor A1
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03030
DNA replication
gtr03420
Nucleotide excision repair
gtr03430
Mismatch repair
gtr03440
Homologous recombination
gtr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GLOTRDRAFT_56420
03420 Nucleotide excision repair
GLOTRDRAFT_56420
03430 Mismatch repair
GLOTRDRAFT_56420
03440 Homologous recombination
GLOTRDRAFT_56420
03460 Fanconi anemia pathway
GLOTRDRAFT_56420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gtr03000
]
GLOTRDRAFT_56420
03032 DNA replication proteins [BR:
gtr03032
]
GLOTRDRAFT_56420
03400 DNA repair and recombination proteins [BR:
gtr03400
]
GLOTRDRAFT_56420
Transcription factors [BR:
gtr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
GLOTRDRAFT_56420
DNA replication proteins [BR:
gtr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
GLOTRDRAFT_56420
DNA repair and recombination proteins [BR:
gtr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
GLOTRDRAFT_56420
MMR (mismatch excision repair)
GLOTRDRAFT_56420
DSBR (double strand breaks repair)
HR (homologous recombination)
GLOTRDRAFT_56420
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
HROB
RADX
Motif
Other DBs
NCBI-GeneID:
19307110
NCBI-ProteinID:
XP_007862999
JGI:
Glotr1_1_56420
UniProt:
S7QER8
LinkDB
All DBs
Position
Unknown
AA seq
613 aa
AA seq
DB search
MEVQLTKGIVKRLSAAHETGEDLTNSQPTLQVISFRKVDSPPNATNQTTDRYRTIVSDGE
NIMQGMFATQLNKMIEDQSIKKNTVIVVENLTCSYLQGKRLIIIMGARVLAQVESKIGNP
VALQAPGAAGAATAAESGSTPAPQIPAAAPSTSATTPTSQAQSRQQGQAKTGGKPNSVYP
IEGLSPYQNNWTIKARVTQKTDIKTWSNQRGEGKLFSVTLMDETAEIRATGFNAVVDELY
DKLQEGHVYYISKARVNLAKKKFSNIANDYELALERNTEVEECLDPTNVPAVRYNFVELN
GLEQLEKDSTCDVIGVVKSVGDVGTITSKASNKTVAKRDLTIVDRSGKAVRVTLWGAQAE
QFSADDSPVIAFKGVKVGDFGGRTLSMYSSSTMTINPDIPEAHVLRGWYDAKGVEQSFQS
LSNGSGAGSGTMGGFNRSEMRTLFDVKESGLGTSDKADYFSCRATIMHIKGDNISYPACP
TEGCNKKVVDLSDGWRCEKCDRSFEKPEHRYIMSMAVADHTCQAWLQGFNDVGVAVFGMS
ANELVDIKERDESAYNVILHKATCSTFNFACRAKQDTYNEQTRIRYGISRILPLDYAEEA
RVLRDTLQSWDKC
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggaggtccagcttaccaaagggattgtcaaaagactttctgccgcacacgagacgggt
gaagacctcactaactctcaaccgactctgcaagttatttcgttccggaaagtggactcg
ccaccaaatgcgactaatcagactaccgatcgctaccggaccatagtatccgatggagag
aacatcatgcaaggcatgtttgccacgcagctgaataagatgatagaagaccagtcgatt
aagaagaacacggttattgttgtcgagaacttgacgtgtagctatcttcaagggaaaaga
ttgattatcattatgggcgcacgagtcctagcacaagtcgagtcgaagatcggcaatccc
gtggctctgcaagctcctggtgctgccggtgctgctactgctgcggagagtggatctaca
cctgctccccagatccccgctgcagctccttctacttctgccacgactccgacttcccaa
gcacagagccgacagcaaggtcaggcaaagacgggaggaaagccgaattcggtgtatcct
attgaaggtctcagcccctatcagaataactggaccatcaaagcgcgtgtcactcaaaag
acggatatcaagacctggtcgaaccagcgaggggaaggcaagcttttcagcgtcactctc
atggacgagacggcagaaatacgtgccaccggattcaatgctgttgtcgacgaactctat
gacaaactgcaagagggtcatgtctactatatctcgaaagcccgtgtgaacttagccaag
aagaaattctccaatatcgctaacgactatgagctcgcccttgaacgcaacaccgaggtg
gaagagtgtcttgatccaaccaatgttcctgcagtccggtacaatttcgtcgaattgaac
ggcctggaacagcttgagaaggattctacttgcgatgtcatcggcgtcgtcaagagcgtc
ggggatgtgggtactatcacatcaaaagcgagtaacaaaacggtcgcgaagcgtgatctg
accatagtggaccgctccgggaaagcggtccgtgtcaccctatggggcgcccaagcggaa
cagttcagcgcagatgactcgcccgtcattgctttcaagggggtgaaggtcggcgatttc
gggggccgcacgctgtccatgtatagttccagcacgatgacaatcaatccggacataccc
gaagctcatgttctccgagggtggtacgatgcaaagggagtcgagcagagtttccagtca
ttgtccaatggtagtggtgctgggagcggtaccatgggaggcttcaaccgctccgagatg
cgcaccttgttcgatgtcaaggagtctggcttgggcacgtccgacaaggcagactatttc
tcgtgccgagcaacaatcatgcatatcaagggtgacaacatatcataccccgcgtgtcca
accgagggatgcaataagaaagtagttgatctcagtgacgggtggcgttgtgagaaatgt
gataggtcgtttgaaaagccagagcatcgatatatcatgtctatggctgtggctgatcat
acctgccaagcgtggttgcaagggtttaacgacgtaggagtggccgtctttggcatgtct
gccaatgagttggtggacattaaggagagggatgaatccgcttacaatgttatcttgcac
aaagcaacttgctcaaccttcaacttcgcttgtcgtgctaagcaagacacctataatgaa
caaactcgcattcgttacggtatatcgcgtatactgcccttggattatgcagaggaggct
cgtgtcttgcgagacactctccagtcgtgggataagtgttga
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integrated database retrieval system
