Gloeophyllum trabeum: GLOTRDRAFT_57794
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Entry
GLOTRDRAFT_57794 CDS
T03130
Name
(RefSeq) WD40 repeat-like protein
KO
K15542
polyadenylation factor subunit 2
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GLOTRDRAFT_57794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_57794
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
GLOTRDRAFT_57794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_EML
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_IFT140_1st
ANAPC4_WD40
DSE1_N
Beta-prop_WDR19_1st
ASA1
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
CFAP251_N
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
PROPPIN
eIF2A
Beta-prop_HPS5
NBCH_WD40
PAC11
WD40_RFWD3
Beta-prop_DCAF4
Tricorn_2nd
Ge1_WD40
PEP5_VPS11_N
Beta-prop_RIG_1st
Beta-prop_NUP159_NUP214
Nucleoporin_N
WD_LRWD1
TRM82_WD
Beta-prop_WDR11_2nd
Beta-prop_SPT8
B-prop_COPA_B_2nd
WDR54
Beta-prop_ELP1_1st
DNAI3_WD
Det1
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
19307198
NCBI-ProteinID:
XP_007863150
JGI:
Glotr1_1_57794
UniProt:
S7RZ12
LinkDB
All DBs
Position
Unknown
AA seq
352 aa
AA seq
DB search
MGRWALMRKLRPNPTYVPQVRPALPYIIDLLPPKAYPDNASTSLCTKFVHTSTNKIRCPV
NVVVWTPEARRVLTGSTSGEFTLWNGLTFNFETILQAHDSAVRAMTFTHAGAFLASTDQS
GVIKYFQPNMNNLAAWQGHREAIRGLSFSPDDRRFATASDDSTIRIWAFEESREERVLTG
HGWDVRCVEWHPTKGLLVSGSKDNQIKFWDPRTGTALATLHQHKNTIQALAWSPNGNLVA
SASRDQTVRVFDIRAMKEFKVLKGHKKEVCSVTWHPIHPILVTGGSEGAILHWDLTTPTP
TIPAASPQARAALPQAHDSNVWALAFHPLGHLLVSASNDHTTRFWARERPGE
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atggggcgctgggcgttgatgcggaagctgaggccgaacccgacgtatgtgccgcaggtg
aggccggcgctgccgtatatcatcgacttattgccgccgaaggcgtatcctgacaatgcc
tcgacgtccctatgtacaaagttcgtgcacacgtccacgaataagatccggtgcccggtg
aacgtcgtcgtgtggacgcccgaggcgcggcgcgtgctcaccggctcgacgtcgggcgag
ttcacgctctggaacgggctcacgttcaacttcgagacgatcctgcaggcgcacgacagc
gcggtgcgcgcgatgacgttcacgcacgcgggcgcgttcctcgcgagcacggaccagagc
ggcgtgatcaagtacttccagccgaacatgaacaacctcgccgcgtggcaggggcaccgc
gaggcgattcggggcctgagttttagtccggatgatagacggttcgcgactgcgagcgat
gattcgacgattaggatttgggcgtttgaggagagtcgggaggagagggtgttgacggga
catgggtgggatgtgaggtgcgtggagtggcatccgacgaaggggctgcttgtctctggg
agcaaggacaaccagatcaagttctgggatccacggacggggaccgcgctggctaccctg
caccaacacaaaaacacgatccaggcactcgcgtggtctccgaacggcaacctcgtcgcg
agcgcgtcgcgcgaccagaccgtgcgcgtgttcgacatccgcgcgatgaaagagttcaaa
gtgctcaaggggcacaaaaaggaagtctgctcggtaacctggcacccgatccacccgatc
ctggtcaccggcggctcggagggcgcgatcctgcactgggacctcacgacacccacgccg
acgatcccggcggcctcgccccaggcgcgcgcggcgctcccgcaggcgcacgacagcaac
gtgtgggcgctcgcgttccacccgctgggccacctgctcgtgagcgcgtcgaacgaccac
acgacgcgcttctgggcgcgcgagcggccgggcgag
DBGET
integrated database retrieval system