Gloeophyllum trabeum: GLOTRDRAFT_65749
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Entry
GLOTRDRAFT_65749 CDS
T03130
Name
(RefSeq) antiviral helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLOTRDRAFT_65749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_65749
03041 Spliceosome [BR:
gtr03041
]
GLOTRDRAFT_65749
03009 Ribosome biogenesis [BR:
gtr03009
]
GLOTRDRAFT_65749
03016 Transfer RNA biogenesis [BR:
gtr03016
]
GLOTRDRAFT_65749
Enzymes [BR:
gtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLOTRDRAFT_65749
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
GLOTRDRAFT_65749
Spliceosome [BR:
gtr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GLOTRDRAFT_65749
Complex C
U4/U6.U5 tri-SnRNP related factors
GLOTRDRAFT_65749
Ribosome biogenesis [BR:
gtr03009
]
Eukaryotic type
Pre-60S particles
Helicases
GLOTRDRAFT_65749
Transfer RNA biogenesis [BR:
gtr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
GLOTRDRAFT_65749
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
19307679
NCBI-ProteinID:
XP_007870022
JGI:
Glotr1_1_65749
UniProt:
S7PVN7
LinkDB
All DBs
Position
Unknown
AA seq
1015 aa
AA seq
DB search
MEVNGNASKKPRIASPRPEVVDEVEIEAKREVAASAGLTGAAVESGTRLELRHQVRHQVA
VPPGYNYIPIANHVPPAKPAREYKFTLDPFQQVSVHAIQRNESVLVSAHTSAGKTVVAEY
AIAQCLQNKQRVIYTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPSATCLVMTTEILR
SMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAMQFA
EWICKSHEQPCHVVYTDFRPTPLQHYLFPAGGEGIYLVLNEKGEFREDNFTKAMGMLQEK
QGEDPADPKSGRGRKGKTKKGGDKKGPSDIQKIVKMIMQKNYNPVIIFAFSKRECEALAL
NMSKFEFNSADEQDLVSSIFDSAIQNLSAEDRQLPQIANLLPLLKRGIGIHHGGLLPILK
EVIEILFQEGLIKALFATETFSIGLNMPAKTVVFTATRKFDGREFRNLSSGEYIQMSGRA
GRRGLDDRGVVIMMCDEKLEPSAAMQMIKGEADRLDSAFHLGYNMVLNLMKVEGISPEYM
LERCFFQFQNSAGVPLLEDELSREEQAMKSITISDESLVADYHSYRQQLDQMAADFRDVI
THPNYSLPFLQPGRLVKVKYQKLDFGWGVVINYHKRLPPKNRPMPVAEEIPPHEQYIVDV
LLNCATGSSVPKDRNALNLPPTPGGVQPCQPGQTGEPLVIPILLSALDAISYLRIFLPKD
IRSHQARETVWKSVVEVQKRFPDGIPLLDPIQNMEIKDDKFKQLVEKIEVMESKLMSSPL
HKDPRLPELYSLYSKKQEHQQRIRSLKKRIQATNDVLQMEELKCRKRVLRRLGFTTADDI
VDVKGRVACEISTGDELLLTELIFNGVFNPLSPEQCAGLLSCFVFTEKSEQVTKLKEELA
APLRVMQEIARRIAKVSKESKLPVVEDEYVQSFKVELMDAVVQWCRGASFSDICKLTDQF
EGSVIRVFRRLQELIRQMCQAAKVIGNAELEAKFEKASEMLERPNSVIFCSSLYL
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgaacgggaatgcaagcaaaaagccgcgtatagcgtcccccaggccagaggtt
gtcgatgaagttgagattgaggcgaagcgggaggtcgctgcgagcgctggtctgaccggc
gctgcagtcgagagcgggacgcggctcgaacttcgacaccaagtccgccaccaagtcgcg
gttccaccgggctacaattatatccctattgcaaatcacgttcccccagccaagcctgct
cgggagtacaagttcaccctcgatcccttccagcaagtatcggttcatgcaatacagaga
aatgagagtgtgctcgtctctgcgcataccagtgccggtaagaccgttgtcgcggaatat
gccatcgcccaatgtctgcagaacaagcagcgtgttatctacacaagtccgatcaaggct
ctaagtaaccagaagtaccgcgaaatgcttgctgagtttggggatgtgggcctcatgacc
ggagacgttaccataaatccgtctgcaacatgtctagtcatgactaccgagattctacgg
tccatgctgtaccgcggctccgaaatcatgcgcgaagtcgcctgggtcattttcgacgag
atccactacatgcgcgacaaggagcgcggcgtcgtgtgggaggagacgatcatcctcctc
ccgcacagcgtgcgctacgtattcctgtccgcaacgatccccaacgcgatgcagttcgcc
gagtggatatgcaagtcgcacgagcagccgtgccacgtcgtgtacaccgatttccgcccg
acaccgttgcagcactacctcttcccggcgggcggcgaggggatctacctggtgctgaac
gagaagggtgagtttagggaggataatttcaccaaggcgatggggatgctgcaggagaag
cagggtgaggaccctgccgaccccaagagcgggcgcgggcggaaggggaagacaaagaag
ggcggagacaagaaagggccgtcggatatccaaaaaatcgtcaagatgatcatgcagaaa
aattacaacccggtcatcatcttcgccttcagcaagcgtgagtgcgaggcgctcgcactg
aatatgtccaagttcgagttcaactcggccgatgagcaggacctggtgtccagcatcttc
gacagcgcgatccagaacctgtctgcggaggaccgccagctgccgcagattgcgaacttg
ctccccctgctcaagcgcggcatcgggatccaccacggcgggctgctcccgatcctgaaa
gaggtcatcgagattctcttccaggagggcctgattaaggcgctctttgcgacggagacg
ttctctatcggtctgaacatgcccgcaaagaccgtcgtgttcactgcgacgcgcaagttc
gacgggcgtgagttccgtaatctgtcatcgggagagtatatccagatgtcggggcgtgcg
ggacgacgtgggctagacgaccgcggagtggtgattatgatgtgcgacgagaagctcgaa
ccgagcgcggcaatgcagatgatcaaaggcgaggcggaccgcctggactctgcgttccac
ctcggctacaacatggtgttaaacttgatgaaggtggaggggatcagtccagagtacatg
ctcgagcgctgtttcttccagttccagaacagcgccggcgtacccctgttagaagatgag
ctttcgcgggaagaacaggccatgaagtccataaccatctcggacgagtcgctcgtcgcg
gattaccattcgtaccggcaacagctcgaccagatggcggccgacttccgcgatgtcatc
acccacccgaactatagcttaccgttccttcaacccggccgactggtcaaggttaaatac
cagaagctagatttcggctggggcgtcgtaataaactatcacaagcggctgccgccaaag
aacaggccgatgccagtggctgaggagatccctccgcatgagcaatacatcgtggacgta
ctgctaaactgcgcgacgggttcctcggttcccaaggatcgcaacgcgttgaatctcccg
cccacacccgggggtgtgcaaccgtgccagccggggcagacgggcgagccgctcgtcatc
cccatcctcctatccgcgctggatgcgatcagctatctgcggatattcttgcccaaggat
atacgctcgcatcaggcgcgggagacggtgtggaagagcgtcgtggaggtgcagaaacga
tttcccgatgggataccgctgttggaccctatacagaatatggagatcaaggatgacaag
ttcaaacagctggtggagaaaattgaggtaatggagtcgaagctcatgtcgagcccgcta
cacaaggatccacggttaccggagctctactctctctattcgaagaaacaggaacaccag
caacggatacgttccctgaagaagcgcatacaggctacgaacgacgtccttcaaatggaa
gagctcaaatgccggaaacgtgtcctccggcggctcgggtttactacggcggatgacatc
gtggacgtgaagggccgagtcgcctgcgagattagtacgggcgacgagctgctcttgaca
gaattgatcttcaatggcgtgttcaacccactatcgcccgagcagtgcgcaggtcttctg
agttgcttcgtcttcacagagaagagcgagcaagtcacaaagttgaaagaagaactcgct
gcgccactccgtgtgatgcaagagatcgcgaggcggatagcgaaggtgtcgaaagagtcg
aagttgccggtcgtggaggacgaatacgtgcagtcgttcaaggtcgagcttatggacgcc
gtcgtccaatggtgtcgcggcgcttctttctcagacatctgcaagctcacggaccaattt
gaagggagcgttatccgtgtgttccgtagattgcaagagctcatccggcagatgtgccag
gcagcgaaggtcattgggaacgccgagttggaagctaaatttgagaaggcgtcagagatg
ctcgagcgaccgaattcagtcatattctgctcgtctttgtatctatag
DBGET
integrated database retrieval system
