Gloeophyllum trabeum: GLOTRDRAFT_67460
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Entry
GLOTRDRAFT_67460 CDS
T03130
Name
(RefSeq) antiviral helicase
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLOTRDRAFT_67460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_67460
Enzymes [BR:
gtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GLOTRDRAFT_67460
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
GLOTRDRAFT_67460
mRNA degradation factors
3'-5' decay
Ski complex
GLOTRDRAFT_67460
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-GeneID:
19307797
NCBI-ProteinID:
XP_007860585
JGI:
Glotr1_1_67460
UniProt:
S7QLA8
LinkDB
All DBs
Position
Unknown
AA seq
1231 aa
AA seq
DB search
MSSDQEQLLADIVNPKPETAERLLKELGLSGVPDREHVHQELEKRFLLPNDTLPTHWLPT
YQIHWDRKLEIPSLLKVAPSPAPTTVSFVRAGLEGRVTGYTEVPTTRLSTGLTSTSLERA
PAPSKSFVRGKSGYVPFWPGGLDEALKESADPVELDKSVKGLRTIPPGFTRGLRLPGDDP
DDEILGDLGDRENEIEGSFENGIQPESFIEDPEDTEQTNGFVPNGAEIDDLLPMTKTSLN
PLSSGRKRIKRAKIEKREWAHVVDINKPMKNFHELVPEMAHKYPFELDTFQKEAVYHLEM
GDSVFVAAHTSAGKTVVAEYAIALAEKHMTRAIYTSPIKALSNQKFRDFKQTFSSQSVGI
LTGDVQINPEASCLVMTTEILRSMLYKGADLIRDVEFVIFDEVHYVNDAERGVVWEEVII
MLPDHVNIILLSATVPNAKEFADWVGRTKKKDIYVISTAQRPVPLEHFLYAGRELYKIVD
AKRNFLGLGYKDAGEALRRKQDKEREAAGLPPVQRVGARGAAPAQRGQRGGQRGGPPTRG
SSGRGGAGVRGGGPQRTVHQGTDKSLYVHLLGHLKKKSLLPVVIFTFSKKRCEENAATLV
NLDLCTALDKSEIHVTIEKALSRLEASDKKLPQISRMRDLLSRGIGVHHGGLLPIVKEVV
EILFARGLVKVLFATETFAMGVNMPAKCVVFSGTRKHDGRSFRDILPGEYTQMAGRAGRR
GLDTTGTVIIIANDNIPEQTTLQHMILGTPARLQSQFRLTYNMILNLLRVEALRVEEMIK
RSFSENATQKLLPDHQKKVIESEKKLASFPTLDPDIEAYYDASFDIVTLTRQLVAIGNKY
LTSGRVVILRDGHFKSNVATILKPTRGPTDDSKMFLVLALVDPETRSRKYDVDYDAMPPR
WPIDPHSLKVREANYEILRVPWKSIAMITNQNIKVDLVAILTRRWISAMREVTRALVALV
DEWCNVGEVPEINWGKQRSLEMQEVLQARDELTKQLADKAFCTSRPEFDEHYSVVHAEKV
LRASIANLKMAISDQNLELIPDYEQRIAVLQELQFIDENSTVLLKGRVACEINSANELVL
TELILENMLAVYDPEEVVALLSCFVFQEKTDVEPELPPKLQEGRDAIIAINERVSKVQEA
HQVPGEEFRQLKFGLMEVVYEWAKGMPFSQITALTDVAEGTIVRVITRLDETCREVRDAA
RVIGDADLMKKMEEAQLKIKRDIVFAASLYF
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgagctctgaccaggaacaattactcgccgacatcgtcaatcctaaacctgagaccgca
gaacgtttgctgaaggaacttgggctctccggcgttccggacagagaacacgtccatcag
gaattagaaaagagattcctcttaccgaacgacacgcttccgacgcactggcttcccacg
tatcaaatacactgggaccggaagcttgagatcccctctttgctcaaggtcgctccatcc
ccagccccgaccacagtctccttcgttcgcgcaggcctcgagggacgggtaacgggatat
actgaagtacccaccacacggctcagtaccgggttgacttccacctctctagaacgagca
cccgcccccagcaaaagctttgtccgcggaaagtctggatatgtccccttctggcccggt
ggactggatgaagctctcaaagaatcggctgatccagtcgagctcgataagagtgtgaaa
ggactgaggaccatccctcccggtttcacgagaggactccgactgcctggtgatgatccc
gatgatgagatactcggagacctgggtgatagggaaaatgagattgagggttcctttgag
aatgggattcagcccgaaagtttcatagaagaccccgaagacactgaacagaccaatggc
ttcgtaccaaacggcgcagaaatagacgatttacttccaatgacgaaaacaagtttgaat
cctttgtcatcagggcgtaaacgcatcaagcgcgccaaaatcgagaaacgggaatgggcg
catgttgtagatatcaataagcccatgaagaacttccacgagttagtgcccgagatggca
cacaagtatcctttcgaacttgatactttccagaaggaggccgtgtatcatctggagatg
ggcgactctgtcttcgtcgctgctcacacgtccgccgggaagactgtcgtagcggaatac
gcgatagctctagcggagaaacacatgacaagagcgatctatacatctcccatcaaggct
ctctccaatcaaaaattcagggatttcaagcaaactttctcgtcccaatctgtcggcatc
ttgaccggagatgtgcagatcaaccctgaagcaagttgtctcgtgatgacgaccgagatt
ctgagaagcatgctgtacaaaggtgcagacctcattcgagacgttgaatttgtcatattt
gatgaagtccactacgtcaatgatgctgagagaggtgtcgtttgggaagaggtcatcatt
atgcttccagaccatgtcaatataatccttctgtctgcgactgttcctaatgcgaaggaa
ttcgcagactgggttgggcggacgaagaaaaaggatatctatgtaatctctacagcgcaa
cgtccagtgccattggagcacttcctctatgctgggcgcgagttgtacaagatcgtcgac
gcgaagcggaatttcctgggtctaggatacaaggatgcaggagaagcactcagacgtaaa
caggacaaggaacgggaagccgctggtttgccacctgttcagcgcgttggcgctcgaggc
gctgctccagcccagcgaggccaacgtggagggcagcgtggtggcccgccgacgcgggga
tcatctggacgtggaggtgctggggttcgaggaggggggccacaaaggacggttcatcaa
gggacggataagagtctttacgtgcacttacttggccatctcaagaagaagtcgttattg
cccgttgtcatattcacgttctccaagaagcgttgtgaggagaatgcggcaacgcttgtc
aacttggatctgtgcacagccttggataagagcgaaatccacgtaacgattgagaaggca
ttgtcaagactagaggcatctgacaagaagctacctcaaatcagtcgtatgagggacctc
ctttcccgcggcattggtgttcaccacggtggtttgcttcctattgtgaaagaagtcgtc
gagatcctgtttgcacggggactggtcaaagtcctgttcgccacggaaaccttcgctatg
ggagtcaatatgcccgctaaatgcgtcgtcttctccggaactcgaaaacacgacgggcgc
agctttagagatattctgcccggtgagtatacccagatggctggccgcgcgggtcgtcgt
ggtctggacactaccggtactgtgatcattattgcgaatgacaacatcccggagcaaacc
acgcttcaacacatgatcctcgggactcccgcgagactccaatcccaattccgactgacg
tacaacatgatcctgaatttgctccgtgttgaggcgttaagagtggaggagatgatcaag
cgcagcttctctgaaaacgcgacgcagaagctactccctgatcatcaaaagaaggtgata
gagagcgagaaaaagcttgcctcgttccccacactcgaccctgatattgaggcctattat
gacgcatcgtttgacatcgtcactctgacccgacaactggtggctattggaaacaaatat
ctcacgtctggaagggtagtcattctccgagatggtcatttcaagtctaatgtcgcaacg
atcttgaagcctaccagagggcccacggatgattcgaagatgttcctggtcttggcactg
gtcgatcccgagacacgaagcaggaagtatgacgtcgactatgatgcgatgccgcctcgc
tggccgatagatcctcactctttgaaggtcagagaggccaactacgagatcctccgagta
ccgtggaagagcatcgcgatgatcacaaatcagaatatcaaggtcgacttggtcgctatt
ctcactcgtcgctggatatctgccatgcgcgaggttacgagggcacttgtcgcccttgtc
gatgagtggtgtaatgttggcgaagtcccggaaatcaactggggtaaacagcggtcactc
gagatgcaggaggtcttgcaagctcgagatgaattgacgaagcaactggccgataaggcc
ttttgcacgtctcgccccgagtttgatgagcactattccgtagttcacgcagagaaagtg
ctccgtgcgagcatagcgaacctcaagatggcaatatcagatcagaacctggagctcata
cccgattacgagcagcggatcgctgtcctccaggagctgcagttcattgacgagaactct
actgttttactgaaaggacgcgtagcttgcgagatcaattctgcaaatgaactcgtgctt
acagagctcatcctcgaaaatatgctggcagtatacgatccggaagaagttgtcgcattg
ctttcgtgtttcgtcttccaagagaaaacagacgtcgagccggaactaccgccgaagctg
caggaaggtcgggatgcaatcatcgcgatcaacgaaagggttagcaaggtacaggaggcc
catcaagtaccgggcgaagagttccgtcagttaaagttcggcttgatggaagtcgtctac
gagtgggcaaaaggaatgccgttctcgcagatcactgcgttgactgacgtcgcagaaggt
actattgtacgtgtcatcactcgactcgatgagacctgtcgcgaagtgcgagacgccgcg
cgagtaattggagacgcggacttgatgaagaagatggaagaagctcaactaaagatcaaa
agagatattgtctttgcggctagtctgtatttctag
DBGET
integrated database retrieval system
