Gloeophyllum trabeum: GLOTRDRAFT_70235
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Entry
GLOTRDRAFT_70235 CDS
T03130
Name
(RefSeq) beta and beta-prime subunits of DNA dependent RNA-polymerase
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GLOTRDRAFT_70235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtr03021
]
GLOTRDRAFT_70235
Enzymes [BR:
gtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GLOTRDRAFT_70235
Transcription machinery [BR:
gtr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
GLOTRDRAFT_70235
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
19308066
NCBI-ProteinID:
XP_007862169
JGI:
Glotr1_1_70235
UniProt:
S7S067
LinkDB
All DBs
Position
Unknown
AA seq
1725 aa
AA seq
DB search
MNISNPIPSTVTSISFSFLTAEEIRRISVKQIVNPTLLDDLNRPNIGGLYDPALGPSDKQ
DICATCRLTYFTCPGHFGHIELPSPVFHPLFMVNMYNLLRGTCLFCHKFKMSRTTICKYI
AKFRLLERGLLEEALIVDDIKRATRRKGDTEGDDDEIAEESIEEFEWRVNAYVFAVLSAR
RGRTRDDYKDPAVYQARKDLMIEFLKATILKKCQNCNAFGYTFRKEGHTKIIEYDLSKKQ
KAQHAMLNVKRPNVLSSPVSTHGSAKNRAGADSDTDESEPESEGPGENTFSDQEFEEEAP
QPAEAQLPKSASGKVKTSRGRNERVMASEECRAHLRRLFANEAQICSLLFGRHGPFAAIT
PEGISVASPDMFFMEVLPVTPTRFRPPAKMGEMLFEHPQNELLAKVLNTCYRLRDRNLEL
RAASAKGSGSDEATQRRILGQLLDSLIQLQVDVNSFIDSSKNPQPMRQGKLPPPGVKQLL
EKKEGLFRKHMMGKRVNYAARSVISPDVNIEPSEIGIPPVFAQKLTFPEPVTPANFHQLR
QYVINGPKQYPGATMVEFEDGHLQFLDKLSVEQRTAIANQLLTPQEGTSSRYGLQTRTPS
VNKKVYRHLQDGDILILNRQPTLHKPSMMCHRAKVLHGEKTIRMHYANCNSYNADFDGDE
MNIHFPQNQVARAEAYNIANTDNQYLVPTSGKPLRGLIQDHVVAGVWMTNKDTFFTREEY
FQLLYGAIRPEDESHPTGRLATLPPAIWKPKPRWTGKQIISTVLLNITPDHAEGLNVDSK
AKVPGSLWGKDSEEDKVIFRDGELLCGVLDKSSFGATDYGLVHSVYELYGAEVAGRLLGI
LSRLFTKFLQHRAFTCRMDDLALTPDGDSKRRDLLEKGRNLGTEGAIENFPTLEKVPPEE
KPEQLRALLQDVLRDDNKMAGLDVTVKTKMAKLTKSIADAVMPHGLLRKFPQNHMQAMTQ
SGAKGSAVNAQQISCALGQQELEGRRVPVMISGKTLPSFKAFETQAIAGGYVASRFLTGI
KPQEFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGMRVHYDHTVRGSDSAVYQFHY
GGDALDVTKQKHIMQFDFIARNANTFINRYRPRETVGYVNDQDALAYMKKVLKSKKKSRK
HSDDGPPVDKYEPALSRYSPSRYLGSTSEKFAEKVAEYIKSNPSKLLRSKDMSGELDIRR
RHPLLGPKQFQLLMNVKYMRSLVEPGEAVGLLASQGVGEPSTQMTLNTFHFAGHGAANVT
LGIPRLREIVMTASTKPKTPSMAMSTRPDVPVEEVDAFCKKASRLALSQVVDQVTVKESL
TVNAQARSKQYTIDIAFFPEDEYRSEYDVEPREILAAFSSRFPQILKKEIMTEMKKLDSD
LKGQISGLGKGTAVKETGPAPTEDDGDEEGAGAGRDDDQRSEVDEVEDEKQARKKKQQQA
TYESDDDGDVDLDELNDAAIEAAYADNDEPMEDGAAQPEPVKSESLEELIAVVRRNFMDN
FARATSFKFTESHCVIELLFDADFPKLLLVGIVERVCRKTVIREIAGISDCFRVREETKD
GRTKLTTNGSNFQGLWEVLGEQEESTVEANSIYSNDIYAILKAYGVEAARAAIIREVSNV
FDAYKIDVDMRHLELIADYMTFDGGYRPFNRRGISAQSSPLLKASYETTAAFLSEATLFG
DFDTLTSPSGSIVLGRPNMTGTGAFDIVMPVQDNSGSSAVVPMEQ
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atgaatatctcgaatcccatcccctccaccgtcaccagcatttccttctccttcctgacc
gcagaagaaatccgacgaatatccgtcaaacaaattgtcaacccaacgctgctggatgac
ctgaatcggccgaacattggcggtctgtacgaccccgctcttggcccaagtgataaacag
gacatatgtgcaacatgccgcctaacttatttcacttgtcctggacacttcggccacata
gagctaccgtcacccgtattccaccctctgttcatggtgaacatgtacaatctgctgcga
gggacgtgtctgttctgtcacaaattcaagatgagcaggacaacgatatgcaaatatatc
gccaaattccgcttactagagcgcggtctgctcgaggaagccctcatcgtggatgacatc
aagcgagcaacacggaggaagggtgatacagagggcgacgacgatgagattgcggaagag
tctattgaggagtttgaatggagggtgaacgcgtatgttttcgcagtgctgtcggcgaga
agaggccgaacgcgtgatgattacaaggaccctgctgtgtaccaggcgcggaaggacctc
atgatagagttcctcaaggctacgattctcaaaaagtgtcagaactgtaacgcgttcggc
tacactttccggaaggagggccatacgaaaatcatcgaatatgatttatcgaagaagcag
aaggcacagcacgctatgttaaatgtcaagaggccaaacgttctgtcttcccctgtgtca
acacatggctcggcgaagaatcgcgctggagctgactctgacactgacgagtccgaaccg
gaatcagagggcccgggcgagaacacgttctctgatcaggaattcgaggaggaagcaccc
cagcccgcggaggcccagctgcccaagtccgccagcggcaaagtaaagacctcccggggg
cgcaacgagcgcgtgatggcctcggaagagtgccgcgcccacctccgccggctcttcgcc
aacgaggcacaaatctgttcgctcctctttgggcggcatggtcctttcgcagccatcaca
ccagagggcatctccgtcgcgagtccggacatgttcttcatggaggtgctccccgtcacc
cccacacggttccgcccgcccgcgaagatgggcgagatgctcttcgagcatccgcagaac
gagctgctagcgaaggtgctcaatacgtgctaccgcctgcgcgaccgcaacctcgagctc
cgcgccgctagtgcgaaaggctcaggttcggatgaagcgacgcaacggaggattttggga
cagcttctggattctctcatccagctgcaggtagacgtgaacagcttcatcgatagcagt
aagaacccgcagcctatgcgtcagggtaagttaccgcctcctggtgtcaagcagctgctg
gagaagaaggagggtctattccgcaagcacatgatgggtaaacgtgtcaactacgcagcc
cgctctgtcatctcccccgatgtcaatatcgaaccgagcgaaatcggtatcccccctgtc
ttcgcccagaagctcacgttcccggagcccgtcacacctgctaatttccatcaactgcgt
cagtacgtcatcaatggcccgaagcagtatcctggagccaccatggtcgagttcgaggat
ggacaccttcagttcctggacaaactaagcgtggagcagcggacagccattgccaaccag
ttgcttacgccgcaggagggtacgtccagccggtatgggcttcagacgaggacaccttcg
gtcaacaagaaggtgtaccgacatttgcaggatggcgacatattgatcctcaaccgtcag
ccgacgctgcacaagccgagtatgatgtgtcatcgggccaaagtgctgcatggagagaag
accatccggatgcactacgctaactgtaactcatataatgctgatttcgacggagacgag
atgaacatccatttcccccagaaccaggtcgcacgtgcggaagcatacaatatcgccaat
accgacaaccagtaccttgtccctacttcaggcaaacctctacgaggcctcatccaggac
cacgtagttgctggtgtatggatgactaacaaagacacgttcttcactcgcgaggaatat
tttcagcttctttacggcgcgattcgaccagaggatgagtctcatccaactggacggcta
gcgaccctgccaccagcgatttggaagccgaaaccgcgatggacaggaaagcagatcatc
tcgacagtgcttctgaacatcacccctgatcacgcggaaggtctgaacgtcgattctaaa
gccaaggtacctggtagcttatggggcaaggattcggaagaagacaaggtgattttccgg
gacggcgagctgctttgcggtgtgttggacaaatcgtcatttggtgcaactgattacggt
ctcgttcactcggtctacgaactgtacggcgcggaggttgccggcagactccttggtatc
ctcagtcgactcttcacgaagttcctgcaacaccgggcttttacttgtcgcatggatgat
ctcgctttaacaccggacggtgattcgaagagacgagacttacttgagaagggtcggaac
ctcggaaccgaaggtgccatcgagaacttcccaacgttggagaaagtgcctccagaggag
aagccggagcagcttcgtgccctgttgcaagacgttctgcgcgacgataacaagatggct
ggattggatgtcacggtgaagaccaagatggccaaactcacgaagtcaatagcggacgcc
gtcatgcctcacgggctcttgcggaagttccctcagaaccacatgcaggcaatgacccag
tctggtgccaagggaagtgctgtcaacgctcagcagatatcttgcgcgctaggtcagcag
gagctggaaggtcgtcgagttcctgtcatgattagtgggaagacccttccatcattcaaa
gctttcgagactcaggccatcgccggaggttatgtcgctagtcgattcttgaccggtatc
aagccccaagaattcttcttccattgtatggcaggtcgagagggtcttattgacactgct
gtgaagacttctcgttccggatatttacagcgctgcttgatcaaacacctggaaggaatg
cgagtacactatgaccacacagtccgcggaagcgactctgcagtgtaccaattccattat
ggcggcgatgccctagacgtgaccaagcagaagcacatcatgcagtttgactttattgcg
cggaatgccaacaccttcatcaatcggtaccgaccgagggagaccgtcgggtacgtgaac
gaccaggacgctttggcttatatgaagaaggttctcaagtccaagaagaagtcgaggaaa
cactcggacgatggcccgcctgtggacaagtacgaaccggctctttctcggtacagccct
tcccgttatctgggaagcacatccgagaagtttgccgagaaggttgctgagtatatcaag
tccaacccttccaagcttctacgatccaaggatatgagcggagagctcgatatcagacgg
cggcatcctctactaggacctaagcaattccagcttctgatgaatgtcaagtatatgcgc
agcctggtggagcctggagaagctgtcggcctccttgcttcccaaggtgttggtgagcca
tcgacacagatgacactgaacaccttccattttgctggtcacggtgccgccaacgtcacg
ctgggtattccccgtctacgagaaatcgtcatgacggcctccacgaaacccaagacccca
tcgatggcgatgtctactcgccccgatgtccctgtcgaagaggtcgacgccttctgcaag
aaagccagccgactcgccctgtcccaggtcgtcgaccaggtcacagtaaaggagtcgctg
accgtgaatgcccaggcacggagtaaacagtacacgatcgacatcgcgttcttccccgaa
gatgagtaccggtcggaatacgacgtcgagcctcgggagatcttggcggcattcagctcg
cggttcccacagattctcaagaaggagatcatgacggagatgaagaagctcgattcggac
ctgaaggggcagatctccgggctcggtaagggtaccgcggtgaaggagaccggacctgcg
cccacggaggacgacggcgacgaggagggtgctggtgcaggccgggatgatgatcagagg
agcgaggtggacgaggtagaggatgagaagcaagcgaggaagaagaagcagcagcaggcg
acgtacgaatcggacgacgacggggacgtcgatttggacgagttgaacgatgcagccatc
gaggcggcttacgcggataacgacgagcccatggaggacggcgccgctcagccagagccg
gtgaagagcgagtccctggaagagctgatcgccgtcgtccggaggaacttcatggacaac
ttcgcgcgggcgacctcgttcaagttcaccgagtcccactgcgtgatcgaactccttttc
gacgccgatttcccgaagttgttgctcgtgggcatcgtggaacgcgtctgtcgcaagacg
gtcatccgtgagatcgcaggtatcagcgactgtttccgcgtccgggaagagaccaaggac
ggccggacaaagctcacgaccaacggctcgaacttccaagggctgtgggaggtcctgggc
gagcaggaggagagcacggtggaggcaaacagcatctactcgaacgacatctacgcgatc
ctgaaggcgtacggcgtcgaggcggcgcgcgcggcgatcatccgcgaggtgagcaacgtg
ttcgacgcgtacaagatcgacgtggacatgcggcacctggagctcatcgcggattacatg
acgttcgacggcgggtacaggccgttcaaccggcgcggcatctccgcgcagtcgtcgccg
ctgctcaaggcgtcgtacgagacgaccgcggcgttcctctccgaggcgacgctcttcggc
gactttgacacgctcacgtcgccctcggggagcatcgtcctcggccggccgaacatgacg
ggcacgggcgcgttcgacatcgttatgcctgtgcaggataactccggatccagcgcggtg
gtccctatggagcagtag
DBGET
integrated database retrieval system
