Gloeophyllum trabeum: GLOTRDRAFT_81934
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Entry
GLOTRDRAFT_81934 CDS
T03130
Name
(RefSeq) transcription elongation factor Spt5
KO
K15172
transcription elongation factor SPT5
Organism
gtr
Gloeophyllum trabeum
Pathway
gtr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gtr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
GLOTRDRAFT_81934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtr03021
]
GLOTRDRAFT_81934
03019 Messenger RNA biogenesis [BR:
gtr03019
]
GLOTRDRAFT_81934
Transcription machinery [BR:
gtr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
GLOTRDRAFT_81934
RNA polymerase I system
GLOTRDRAFT_81934
Messenger RNA biogenesis [BR:
gtr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
GLOTRDRAFT_81934
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spt5-NGN
KOWx_SPT5
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
KOW
Spt5_N
KOW1_SPT5
CTD
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
19309126
NCBI-ProteinID:
XP_007870710
JGI:
Glotr1_1_81934
UniProt:
S7REB6
LinkDB
All DBs
Position
Unknown
AA seq
1135 aa
AA seq
DB search
MSDIEEDTYQNGNYDAHEEDGADGVEQDTQQGDETRRKRPAEEDEGGEEDEERMDEDAEG
EMDDEEDEDEDEEDEEDIDEGRPKKRTKHRHKKRNAVNRFLDVEAEVDEDEEDEEDEEDY
GREGFIEEGAEDEVDDIRRAVDHARLDRREREFDDQDLARIAEDYQKRSKQSAVRYTGDM
NEIPQRLLMPSVHDANLWQVRVRPGKERDIVFSLMRKAIDLEYTNKPLSILSAFQRDSLP
GMIYVEARSSKQVSEAINGLVGVFPSRGVNLVPIEEMASLLQIKKQDLTVTPGSWVRIKR
GKYQGDLAQVMDITENGEEVGLKFIPRIDLNPKDDTTIDGRKRKKLGFGNSAVTMRPPQR
FFNYEEVAKVYGRKQVSKRNQVYVFQNDTYKDGFIEKDFKLSALQLENVNPTLDEITRFT
RGMDGAENESAVDLTIIAEASRKAAIAVLQPGDHVEVFEGEQTGVDGVVQSVEGDVVTII
ANSMELENQRVDVPARSVRKKFKPGDHVKVMTGKNADETGLVVSVEGNIVTFLSDMSMQE
VSVFSKDLREAAEVGSGTNIVGNYELHDLVQLDLQTVGVIFKTERDSFRVLDQNGQTRLV
QPHQISMRRDSHRAIATDSEGHELRVGDNVKEVDGEGRKGRILHIHQSHFAFLHNRDYNE
NGGVFVTRARSLASLAPKGNLLKPGTDLSKMNPAMTGGAPGGMAGSAMGRGPRDRLIGLT
VAVIKGTYKGHIGTIKDTNGPAARVELHTNNKIITIEQDKLKHRLSDGRLIPLDQVRFGG
FGGGSMGPPRTANPYAQNGGRTPAGGGWGGATPGAGWGAPPSRTPNPYNESGKTPAWNVS
SRTPNPYAMDGGKTPAWNAATRTPNPYADGSRTPAWNVGSRTPNPYASGGAGASSGWGGA
TPGRPSESSGGWGSGSGSGGWGGASPSKGGGGWGSSSESWSAPTPAAPSDGWGSAPTPGI
PQTPANFATPGAYGATKTPGAYPFTPAATGGTMIESETYEVPKDWLADAALPVKKGIMVQ
FKGTFGDGGLPAWNNGNYESRIGQVLFVSEGDRTRDISATANLQLEKGEEVAAVPVRYLV
PVPPQAKAKAVVLEGKMKGQILHVMEPGVGDRWVCTESWNMFEEIPGDRLVLFKD
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacatcgaagaggacacatatcaaaacgggaactacgatgcccacgaggaagat
ggtgcggacggtgtagagcaagacacacaacaaggagatgagacgcgcagaaagaggccc
gcggaagaggatgaaggtggcgaggaggacgaggagaggatggacgaggatgctgagggt
gagatggatgacgaggaggatgaagatgaggacgaagaggacgaagaggatattgacgaa
ggccggcccaagaagcgaacgaagcaccggcacaagaaacgtaacgccgtgaatcgtttc
cttgatgtcgaagccgaggtcgacgaagacgaagaggatgaagaggatgaagaggactat
ggcagagagggtttcattgaagagggcgcggaggatgaggttgatgacattcgtagagcc
gtggatcatgcaagactagatcgacgagaacgagagttcgatgaccaagaccttgcacgg
attgctgaagattaccagaagcggtccaagcagtctgcagtcagatatacaggggacatg
aatgagatcccccaacggttgctcatgccatccgttcacgacgccaatttgtggcaagtc
agagtgcggccaggcaaggagcgtgatattgttttcagtcttatgcgaaaagctatagac
ctggagtacacgaacaaacccttgtcaattctctctgcttttcagcgtgactcccttcct
gggatgatctatgtcgaagcccgcagctccaagcaagtcagtgaagccatcaatggactc
gttggtgtcttcccgagccgaggagtcaacctggtgcctatagaggaaatggctagtcta
ctgcaaatcaagaagcaagatctgacggtcactccgggatcatgggttcgtatcaagcgg
ggcaagtaccagggtgaccttgcgcaggtcatggatatcacggagaacggcgaggaagtc
ggtctcaaattcatccctcgcatcgacttgaatcccaaggacgacactacgattgacggc
cgaaagcggaagaagctgggctttggcaactcggctgtgaccatgcgaccaccccaacgg
ttcttcaactacgaagaagtcgctaaggtgtatggtcggaaacaggtctcaaagcggaac
caggtctatgtctttcaaaacgacacgtacaaggatggttttatcgagaaggactttaag
ctgagcgccctgcagcttgaaaatgtcaaccctactctggacgagatcacacgcttcact
cgagggatggacggtgcggagaatgagagcgctgttgacctgacgatcatcgccgaggcc
tctcgtaaagctgcgatcgcggtcctgcagcctggagatcacgtcgaagtgttcgagggt
gagcagaccggcgtagacggtgtcgtgcagtccgtagaaggtgatgtggtcactatcatc
gccaacagcatggaactcgaaaatcagcgtgtggacgttcctgcgaggagtgtacgcaag
aagttcaagcctggagatcacgttaaagtcatgactggtaaaaatgctgacgagacaggt
cttgtcgtgtcggtcgagggcaatattgtgaccttcttatccgacatgtctatgcaagag
gtatctgtcttctcgaaagatctgcgagaagcagcagaagtgggatccggtaccaatatc
gttggaaactacgagctccatgacctggtacaattagatttgcaaaccgtcggtgtgatc
ttcaagacggaaagagactccttccgtgtccttgaccagaatggccaaacgcgattagtg
cagccacaccagatctccatgcggagggactcacatcgtgctattgccactgattccgaa
ggtcacgaactacgtgtcggagacaacgtgaaggaggtggatggcgagggccgaaaagga
cgcattctgcacatccatcaatcccacttcgccttcctgcataatcgagactacaacgag
aatggcggagtcttcgttactcgagcccgttctctggcatccttggctccgaagggcaac
ctcctaaagcccgggactgacctgtcaaaaatgaaccctgctatgactggcggtgctcca
gggggtatggcaggatcagcaatgggtcgtgggcctagagacaggctgatagggctcacc
gtggcggtcatcaagggcacgtacaagggccacattgggacaataaaggacacgaatggt
ccggctgcccgtgtggaacttcataccaataacaagatcattaccatcgagcaagataag
ttgaagcacagactatccgacggccgacttatcccacttgaccaagtaaggttcggcggg
ttcggcggcgggagtatgggccctccgcggactgcgaacccatacgcgcagaatgggggc
cgtacacctgctggcggcggctggggtggcgcaacgccaggggctgggtggggagctccc
ccgtcccgcacgcctaatccatacaatgagagcgggaagacccctgcgtggaacgtctcc
tctcgcacgccgaatccgtacgcgatggacggcggcaagacccctgcttggaacgccgcg
acccggacgcccaacccatacgcggatgggtcgaggacacctgcctggaatgtgggttcg
cggacgccgaatccgtacgcgagtggaggtgcaggggcatcgtcagggtggggcggcgct
acacccggacggccaagcgaatcaagtggtggttgggggagcgggtctgggagtggtggg
tggggtggtgcttcgcccagtaaaggcggaggcggttggggatcgtcgagcgaatcatgg
tccgcacctactcctgcagcaccgagtgacggttgggggtctgcacccacaccaggaata
ccacagacgccggccaacttcgccacgccaggggcttatggggcgaccaagacacctggc
gcgtacccgttcacgccggctgccacgggaggcactatgatagaaagcgagacgtacgag
gtcccgaaggactggcttgccgatgccgcgctgccagtaaagaagggcatcatggtgcag
ttcaagggcaccttcggcgacggcgggctgcctgcctggaacaacggcaactacgaatcg
cgtatcgggcaggttctgttcgtctcggaaggggatcgaacccgcgatatctcggccact
gcgaacctacagctggagaaaggcgaggaggtcgctgccgtgcccgtacgctatctggtg
ccggtaccgccacaggcgaaggcgaaggcagtggtgctggagggcaagatgaaggggcag
atcctgcatgtgatggagcccggtgtcggggatcggtgggtgtgcacggagagctggaat
atgtttgaggagataccaggggataggctggttttgtttaaggactga
DBGET
integrated database retrieval system
