Guillardia theta: GUITHDRAFT_103637
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Entry
GUITHDRAFT_103637 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
gtt
Guillardia theta
Pathway
gtt03018
RNA degradation
gtt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GUITHDRAFT_103637
09123 Folding, sorting and degradation
03018 RNA degradation
GUITHDRAFT_103637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtt03019
]
GUITHDRAFT_103637
03041 Spliceosome [BR:
gtt03041
]
GUITHDRAFT_103637
Messenger RNA biogenesis [BR:
gtt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GUITHDRAFT_103637
mRNA degradation factors
5'-3' decay
Lsm complex
GUITHDRAFT_103637
Spliceosome [BR:
gtt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GUITHDRAFT_103637
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Hfq
Motif
Other DBs
NCBI-GeneID:
17307195
NCBI-ProteinID:
XP_005837384
JGI:
Guith1_103637
UniProt:
L1JQ55
LinkDB
All DBs
Position
Unknown
AA seq
98 aa
AA seq
DB search
MNADKKQAVLDLSRHVDQKVRVKFSGGREVEGRLKGFDTLVNLVLDECIEYIRDPDDPYK
LTNETRQLGLIVCRGTAVTLVCPCDGMMEIANPFISAE
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctgacaaaaagcaagcggtattggacctcagcagacatgttgatcagaaagtt
cgcgtcaaattttcaggaggtcgtgaagtggagggcaggctgaaggggtttgacacgctg
gtgaatctggtgttggatgagtgcatcgagtacatccgcgatcctgacgacccctacaag
ctcaccaatgaaactcgacagctggggttgattgtgtgcagaggaactgctgtcacacta
gtttgtccatgcgacggtatgatggagattgccaaccctttcatttcagctgagtga
DBGET
integrated database retrieval system