Guillardia theta: GUITHDRAFT_104636
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Entry
GUITHDRAFT_104636 CDS
T02925
Symbol
Rpb1
Name
(RefSeq) Rpb1, RNA polymerase II largest subunit
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
gtt
Guillardia theta
Pathway
gtt03020
RNA polymerase
gtt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GUITHDRAFT_104636 (Rpb1)
09124 Replication and repair
03420 Nucleotide excision repair
GUITHDRAFT_104636 (Rpb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtt03021
]
GUITHDRAFT_104636 (Rpb1)
03400 DNA repair and recombination proteins [BR:
gtt03400
]
GUITHDRAFT_104636 (Rpb1)
Enzymes [BR:
gtt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GUITHDRAFT_104636 (Rpb1)
Transcription machinery [BR:
gtt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
GUITHDRAFT_104636 (Rpb1)
DNA repair and recombination proteins [BR:
gtt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
GUITHDRAFT_104636 (Rpb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_6
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
Motif
Other DBs
NCBI-GeneID:
17306331
NCBI-ProteinID:
XP_005836653
JGI:
Guith1_104636
UniProt:
L1JNL7
LinkDB
All DBs
Position
Unknown
AA seq
1473 aa
AA seq
DB search
MPRNYSQLITSKGCEVVKVKCVQFGILSPDDIKNFSVAEVKTIEKFDAQGKPKTAGLMDP
HLGVPPRAAYKCATCHGSDETCPGHFGHINLAEPVYHCGFLTMLQKILGCVCHQCGMLMV
DERDIHFRSALRLKHPQARLNAIASICKSKKKCSHEAMDKSETQVDRGCGAPHPSILRAG
LNFKVKYPTVSAEEHVDESLQGERELFADEALAILRRITDEDCEKLGLDPRFARPDWMIV
QVVAVSPPHVRPAIMTDSGSRGEDDITFKLGDVIKANNHLKQLKESGAPPSQRRESQMLL
QYHLATMYNNELAGQPQAQHRNGKAIKSLRQRIKGKEGRVRGNLMGKRVDFSARTVITGD
PTISCDQVGVPRSIAYNMTFPEIVSIHNIENMRNLVMNGPDQHPGAKSIVRSDGKRVDLR
FVKMQSDQILDYGYIVERQMQDDDCVIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTS
PYNADFDGDEMNLHLPQSYETKSEIYNIMMVPFQIVSPQKNAPVMGIVQDTLLGCSVLTR
RNTFVEKDLMMNVLMHVPGFDGRVPIPAIVKAPNNKGPLWTGKQVLSLAIPSRRINLSKL
NQYKTDEDTGDVFKQTMTINDAHIVIEDGEILTGSVDSSVIKTSQGGLVHMCWADLGPAG
ARDLLNNTQIIVNHWLLQNGWSVGVSDIVASAETIKAIGASIDAAKKDVQGFVEQWQQGS
LKKQPGCTMHQVFEMQVNSRLNNALSDGSNIVQRGIKFALNRINEMRKSGSKGTDINLCQ
IIALVGQQNIENCRIPYGFKRRTLPHFRKDDPGAESRGFVENSYTQGLTPQELYFHAMGG
REGLIDTAVKTSETGYIQRRLIKALEDVVVRYDGTVRNSLGSVIQFAYGEDGLDATFLLS
QKPPTLEMRKAQLRDNYFIDLDKPESIKNYVHSDIRSQIAGDLEVRDRLKKEYEQIETDQ
EELRSKIFADSSLEGVRDLSERLKVALFPGEDNISIEARNNATHLFNIILRSQFAVKKVM
AGHRLNKKAFDWILGEVESKFRRAIVNPGESVGCIASQSLGEPVTQMTLNTFHFAGVSAK
KGTKGVPRMKELINIAKNIKAPGISIYLKEGHFEDEHKAKAISNKIEYLNLRLLVKHAEI
HYEPNPLLTRVPEDQAIVEAHYELADEPPKNMSPWVLRFVLDNPTLDGKDMYLSEVVAKI
KETYHTGRDEFEIIASDDNADLLVIRLRLLTRSDKYVLAFGKIAMDMLDTITLRGIPDIP
RVLIEQDKLYHKLFSPDDPKYEKYNKAVPSYLYAEGNNLLRVLSFAEVDQVRTVSNDITE
ILQVLGIEAVRCALLKEIREVMRASSYVNYRHIACLVDVMTHRGILMSITRHGINRLETG
PLMRCTFEETVEILLEAAAFSMPDRCLGVAENVILGNLCPLGTGSFELFLNTESCLEAVP
VTHDDGAEPMMFADVGQDELRLVHGLQAWTPVM
NT seq
4422 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgaaactattctcagctcatcacaagcaaaggatgcgaagtggtgaaggtcaaa
tgcgttcagttcggtatcctaagccccgatgatataaagaatttttctgtggcagaagtc
aagacgatcgaaaaattcgatgctcaaggaaagccaaagactgcaggtctcatggatcca
cacttgggtgtcccgccaagggctgcatacaaatgtgccacatgtcatggttctgatgaa
acctgcccgggtcatttcggtcacattaacctggcagagcctgtctatcattgtggtttt
cttacaatgcttcagaaaattttgggttgtgtttgccatcaatgtggaatgctcatggtg
gatgaacgagacatccattttagaagtgctcttcgcctcaaacatcctcaagcgaggctg
aatgcaattgcaagtatttgtaaatccaaaaagaaatgctctcacgaggccatggacaag
agtgaaacccaagtggatcgtgggtgcggggctccacatccttccattctcagggcgggt
ctgaacttcaaagtcaaatatcccactgtgagcgccgaagagcatgttgacgaaagtctg
cagggtgaaagagagctgtttgcagatgaagcgttggcgattttgagacgtatcactgat
gaggactgtgagaagcttgggcttgatccccgcttcgctcgtcccgactggatgatcgtg
caagttgtagcagtttcccctccccacgtacgccccgctatcatgactgattctgggagc
cgtggtgaagatgatatcactttcaagcttggtgatgtgatcaaggcaaacaatcatctc
aaacagctgaaagaaagtggtgcaccaccttcgcaaaggcgagaaagccagatgctcttg
caataccacttagccactatgtacaacaacgaattagctggtcaacctcaggctcaacac
agaaatggcaaggctatcaagagtcttcgccaacgcatcaaagggaaggaaggaagggtt
cgtggaaatttgatgggcaaacgagttgatttttctgcgcgcacagttatcaccggagat
cctactattagctgtgatcaagtcggtgtgcccagatctatcgcttacaacatgacattc
ccggagattgtgtcaattcacaatattgaaaacatgagaaatctggtgatgaatggtccc
gatcaacatcctggggcaaaaagcattgtacgctctgatgggaaaagagttgatctcaga
tttgtcaagatgcaatcagatcaaattttggattatggatacattgtagagagacaaatg
caagacgatgactgtgtcattttcaatcgtcaaccttctctgcacaaaatgtccatgatg
ggccatagagtcaaaattatgccatattcaacgttccgtttgaacctttccgttacatca
ccatacaacgcagattttgatggagacgagatgaatttgcacttgccgcaatcatacgaa
acgaagagcgaaatttacaatattatgatggtgcctttccaaattgtatctccccagaaa
aatgcgcctgtgatgggtattgttcaagacactctcctgggatgtagcgtcctgacaaga
aggaacacgttcgttgagaaagatctgatgatgaatgttctgatgcacgtgcctggattt
gatggacgtgtgccgattcctgctattgtaaaggcccccaacaataagggaccattgtgg
actggaaagcaagtcctttcattggcaattccttcgcgaaggatcaatctttctaaattg
aaccagtacaaaaccgatgaagatacaggagatgtttttaagcaaacaatgactatcaat
gatgcacatatcgtcattgaagatggtgaaatccttacgggttcggtcgactccagtgtc
atcaagacaagccaaggaggattggttcacatgtgctgggcagatcttgggccggctggt
gcccgcgacctattgaataacactcagatcatagtgaaccactggctgttacagaatggt
tggagtgttggcgtcagcgacattgttgctagtgcagagacgatcaaggccatcggtgca
tcgatcgatgctgcaaagaaagacgtacaaggatttgtggaacaatggcagcaaggctct
ctgaagaagcagccagggtgtaccatgcatcaggtttttgagatgcaagtgaactcaagg
ttgaacaatgccctttcggatggatcgaacattgttcagaggggtatcaaatttgctctc
aataggatcaatgagatgcgaaagtcgggatccaagggaactgatatcaatttatgccag
atcattgctctcgttggacagcagaacattgagaactgtcgtatcccatatgggtttaag
agacgaaccttgcctcatttccgcaaagatgatcctggtgctgagagcagaggtttcgtt
gaaaattcgtacacacaaggattaactccacaagaactctactttcatgctatgggtggc
agagaaggtttgattgatacagctgtgaagacgtcggagacaggatacattcagagacgg
ttgatcaaggcattggaggatgtcgtggtcagatatgatggaactgtacgaaattcgctt
ggcagcgtgattcaatttgcttatggcgaagatggattggatgcaacgtttctgctttca
cagaaaccaccaactctcgagatgcgaaaggcacagttgcgcgacaattatttcatcgat
ttagacaaaccagaatctatcaagaattatgttcactccgatattcgttcacaaatcgcc
ggagacctggaggtccgagatcgcttaaagaaagagtacgagcagattgaaacggatcaa
gaggagttgcgctcgaagatttttgcagattcctctttggaaggggtccgagacctttca
gaacgactgaaggtggcgcttttccctggagaggacaacatttccattgaggccagaaac
aatgcaacacacctgttcaatattattcttcgtagccagtttgctgtgaagaaagtcatg
gccgggcatcggctgaacaagaaagcttttgactggatccttggtgaagtagagtcgaaa
ttcagacgtgctatcgtcaatcctggagaatctgtcgggtgcatcgcctctcagtcattg
ggagagcccgtcacacagatgactttgaataccttccattttgctggtgtgtcggccaag
aaaggtacgaagggagtgcctcgcatgaaagagttgatcaacatagcgaagaacatcaaa
gctccagggatttcgatctatctgaaggaagggcattttgaagatgaacataaggcgaag
gccatttcgaacaagattgaatatttgaatctcaggctgttggtcaaacatgcagaaatt
cattatgaaccaaatccattgcttaccagggttccagaagaccaagccattgttgaggct
cactatgagttggctgatgagcctccaaaaaatatgtctccttgggttcttcgcttcgtt
cttgacaatcctaccctcgatggaaaggatatgtatctcagcgaagtagtcgctaagatc
aaggagacctatcacactgggcgggatgagtttgaaatcatcgcatcagatgataacgcc
gatttgcttgtgatccgcctgaggcttttgacgagatctgataagtatgttttagctttt
ggaaaaattgccatggatatgcttgataccatcactcttcgtggaatccctgacattcca
cgtgtgctcatcgagcaagacaagctttaccataagctgttttctcctgacgatcccaag
tacgaaaagtataacaaagcggtgccatcttatctttatgcggagggcaacaacttgttg
cgcgtactcagttttgctgaagtggatcaggtccgcacagtatcaaacgacatcacagaa
atcctgcaggtgctgggcatcgaggcagtgcgttgcgctctcttgaaagagatccgcgag
gtgatgagggcttcatcgtacgtgaactatcgacacattgcttgcctcgtcgatgtgatg
acgcaccgtggaattttgatgtccatcactcgtcatggaatcaatcgtctggaaacgggt
ccactcatgagatgtaccttcgaggagactgtagaaattcttctggaagctgctgcattc
tctatgccagatcgctgcttgggagtagccgaaaacgtgatcttgggcaatctttgcccg
ttgggcactggcagctttgagctgtttttgaacacggagtcctgcctggaagcagttcct
gtgacgcatgacgacggagcggagcctatgatgtttgccgatgttggacaggatgagtta
aggttggtgcatggcctacaagcttggacacctgtgatgtaa
DBGET
integrated database retrieval system
