Guillardia theta: GUITHDRAFT_111376
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Entry
GUITHDRAFT_111376 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
gtt
Guillardia theta
Pathway
gtt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GUITHDRAFT_111376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtt03019
]
GUITHDRAFT_111376
03041 Spliceosome [BR:
gtt03041
]
GUITHDRAFT_111376
03009 Ribosome biogenesis [BR:
gtt03009
]
GUITHDRAFT_111376
03016 Transfer RNA biogenesis [BR:
gtt03016
]
GUITHDRAFT_111376
Enzymes [BR:
gtt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GUITHDRAFT_111376
Messenger RNA biogenesis [BR:
gtt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
GUITHDRAFT_111376
Spliceosome [BR:
gtt03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GUITHDRAFT_111376
Complex C
U4/U6.U5 tri-SnRNP related factors
GUITHDRAFT_111376
Ribosome biogenesis [BR:
gtt03009
]
Eukaryotic type
Pre-60S particles
Helicases
GUITHDRAFT_111376
Transfer RNA biogenesis [BR:
gtt03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
GUITHDRAFT_111376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ARM_TBCD_2nd
nSTAND3
Motif
Other DBs
NCBI-GeneID:
17299341
NCBI-ProteinID:
XP_005829684
JGI:
Guith1_111376
UniProt:
L1J3J5
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MDEDELFDFFTKKEENSSGGHKQVEEEEAGKRKRPSAEDAVAKEEDNEEEEEGEEEEKPS
ESKKSKRNEDAKLCPVTGEGSVKIYDITPEGQESGRKACRHHIAIPPTMTLEEVQRPVPP
KPPAKEYKFQLDPFQAAAVKSLEKGQSVLVSAHTSAGKTAVAEYAIAMALRDKQRVVYTS
PIKALSNQKFRELTDEFQDVGLMTGDITINPEASLLVMTTEILRSMLYKGSELIRELVWI
IYDEIHYMRDRERGVVWEESIVLVPSKIRFVFLSATIPNAPDFACWVSRVHSQPCNVIYT
DYRPTPLQHYMFPAGGEGLYLVVDEDGNFREENFHKALARLDTSAANTEIAARKKGGPGT
KGKIKERGGSDIYKIIKMIMEKNYDPVIVFCFSKKDCEALALQMSKLDFNNDDEKANIDM
IFNSAVDSLSADDRKIPAVEGILPLLKRGIGIHHSGLLPILKEVIEILFQEGLIKCLCAT
ETFSMGLNMPAKTCVFTGVRKWDGDSFRWVSGGEYIQMSGRAGRRGLDDRGIVILMVDEK
MEPDVAKGMVKGQSDPLNSSFRLGYNMLLNLLRFEGADPEYLIKRSFYQFQMDKQAPDLQ
GQIEDLEVERRQLVVHDEGLVAEYHELVTQRGKVEEEMRSYVLSPKVAVNFLNPGRFVEC
FADETHAQTWGWGVLVSFKKAEKEKDKGSPGASYLLDLLLPCSTRKTIILPTGKEMPVGD
NDSFHPPREGEKHEIQVVQLPLSMVKSLSSIRVYVPQDLRSAENRRSVGKTMSVVQERFP
DGIPLLDPVEDMQIKEEEFQRLVRKSESLETKVKQHKVNKSSSKYAKAYESYKKKLAIAS
SIAVLQKSMKGASGMVFRSELKGMKRVLRRLKYTDGEDVVQIKGRAAAEIDCGDELVLTE
LIFEGVFNDLAPEVCAAVLSCFVFDEKTDENLRLPDELKRPIDSESKLQVDVEEYVKKFK
AGLAEMTLRWCQGVKFVDLMAKSEIFEGSVIRCIRRLEELVTQLAGVCKVIGNTELEKKF
KEASKMMKRDIVFAASLYL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagacgagcttttcgatttcttcaccaagaaggaagaaaacagctccggtgga
cacaaacaagtggaggaagaggaagcggggaagaggaagagaccaagtgccgaggatgca
gtagccaaggaggaggacaacgaggaggaggaggagggggaggaggaggagaaaccttca
gagtcgaagaagtcaaagaggaacgaggatgccaagttgtgccctgtgacgggagaaggc
agcgtgaagatctacgacataacgccggagggacaggagtcaggcaggaaggcctgccgc
catcacatcgccatccctcccaccatgaccctggaggaggtgcagcgccccgttcccccg
aagcctccggccaaggagtacaagttccagctagatcccttccaggcagcagctgtgaag
agccttgagaagggccagtctgtgctggtgtcggcgcatacgtcggcaggcaagacggcg
gtggccgagtacgcgatcgccatggcgctgcgagacaagcagagggttgtgtacacctcc
cctatcaaggcgctgtcgaaccagaagtttcgagagctgacggacgagttccaagacgtg
gggctcatgactggtgacatcaccatcaaccccgaggcaagcttgctggtgatgacgacg
gagattctccggagcatgctgtacaagggcagcgagctgatccgcgagctggtgtggatc
atctacgacgagatccactacatgcgagacagggagagaggagtggtgtgggaggagagc
atcgtcctcgtcccttccaaaatccgattcgtcttcctcagcgccaccatccccaacgcc
cctgactttgcctgctgggtttcccgggtccactcccagccctgcaacgtgatctacacg
gactaccgcccaactcccctccagcactacatgttcccagctgggggtgaagggctgtac
ctggtggtggacgaggacggcaacttcagggaggagaactttcacaaggcgctggcgagg
ctggacacgtcggcagcgaatacggagatcgcagcgaggaagaagggagggccggggacg
aaggggaagatcaaggagcgcggagggagcgatatctacaagatcatcaagatgataatg
gagaagaactatgaccccgtgatcgtgttctgcttctccaagaaagattgcgaggccctc
gccctgcagatgtccaagttggacttcaacaacgacgacgagaaggccaacatcgatatg
atcttcaacagcgccgtcgactcgctctctgccgacgatcgcaagatcccagctgtggag
gggatcctcccgctgctgaagcgcggcatcggcatccaccacagcggcctccttccgatc
ctcaaggaggtgattgagattctgttccaggagggcctgatcaagtgcctctgcgcgacc
gagactttcagcatggggctcaacatgccggccaagacgtgcgtgttcacgggggtgagg
aagtgggacggagactcgttccggtgggtgtcgggaggagagtacatccagatgagcggg
cgagcagggagacgagggctggacgatagaggtatcgtgatcctcatggtggacgagaag
atggagcctgacgtggcgaaggggatggtgaagggtcagtcggaccccctcaactcctct
ttcaggctggggtacaacatgctcctgaacctgctgcggttcgagggggcggacccggag
tacctgatcaagagatctttctaccagttccagatggacaagcaggcgcccgacctgcag
ggtcagattgaggacctggaggttgagaggaggcagctggtggtgcacgacgaggggctg
gttgcggagtaccacgagctggtgacgcagcgggggaaggtggaggaggagatgagatcg
tacgttctgtcccccaaggtcgccgtgaactttctcaaccccgggaggttcgtggagtgc
tttgcagacgagacgcatgctcaaacatggggatggggagtgctggtgagcttcaagaag
gcggagaaggaaaaggacaagggcagccctggcgcctcgtacctcctcgacctcctcctg
ccctgctcgacgaggaagactatcatcctcccgactgggaaggagatgccggtcggggac
aacgactcgttccaccctcctcgggaaggagaaaagcatgagatccaagtggtgcaactg
ccgctgtccatggtcaagagtttgagctcgatcagagtctacgtcccccaggacctgcgg
tcggcagagaacaggaggtcagtcggcaagaccatgtcagtggtgcaggagcggtttccc
gatggcatcccgctgctggatcctgtggaggacatgcagatcaaggaggaggagttccag
cggctggtgcgcaagagcgagtcgctggagaccaaggtgaagcagcacaaggtgaacaag
agcagttccaagtatgcaaaggcgtacgagagctacaagaagaagcttgcgattgcgtcc
tccatcgctgtgctgcagaagagcatgaagggagcgagcgggatggtgttcaggagcgag
ctcaaggggatgaagagggtcttgagaaggctcaagtacacggacggggaggatgtggtc
cagatcaaggggagggcagccgcagagatcgactgcggggacgagcttgttctgactgag
ctgatctttgaaggagtcttcaatgacctcgcgcctgaggtctgcgctgctgtgctctcc
tgcttcgtcttcgacgagaagaccgacgagaacctccgacttccggacgagctcaagagg
cccatcgactctgagagcaagctacaagtggacgtggaggagtacgtcaagaagttcaag
gctgggctagcggagatgacgctgaggtggtgccaaggagtgaagttcgtcgacctgatg
gctaagtctgagatcttcgaagggagcgtcatccgatgcatccgccgactcgaggagctc
gtgacacagctagcgggtgtatgtaaagttattggcaacacggagcttgagaagaagttc
aaagaagcgtcgaagatgatgaagagagacattgtgtttgcagcttccttgtacttgtag
DBGET
integrated database retrieval system
