Guillardia theta: GUITHDRAFT_139398
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Entry
GUITHDRAFT_139398 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
gtt
Guillardia theta
Pathway
gtt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GUITHDRAFT_139398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gtt03021
]
GUITHDRAFT_139398
03019 Messenger RNA biogenesis [BR:
gtt03019
]
GUITHDRAFT_139398
Transcription machinery [BR:
gtt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GUITHDRAFT_139398
Messenger RNA biogenesis [BR:
gtt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
GUITHDRAFT_139398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
17301540
NCBI-ProteinID:
XP_005831745
JGI:
Guith1_139398
UniProt:
L1J9M8
LinkDB
All DBs
Position
Unknown
AA seq
471 aa
AA seq
DB search
MDPAAIEFLQSYESELVGMQRPDKGVINVLTMLASDNIDAPPVANGIVACIEKCIRMFPP
NKKLIPLYLMDSIVKNVGAIYTHLFVQNLTDIFCTSFAAVDNQTRASYIKLLDTWKAQSV
FPPAKNEEIRTRLAAMLQSGIPSNRPGLDRRPEPERRGMMPGVPGNGSGMMPGYHGGGMH
PAVGMNPMHGNIPNNPVTVSSIQEQQTLLQNRVYGLVNSLMPQQPAQPMGLSGLPPNMQM
IESHLLPQPNPLQQLLEDFQLQQGLKDAVGVKDSVEEYAPRQLNSKDLNSREVLDVVYRL
YEGQPFICKTDGRRFRSQEDLSNHLDRLFEINRAKKENLGARERHWFKVISEWTACKDLV
LRKPVDLKVQVDGQPPQESAAFQESVVPADDGAFTGDPRCSACSEKMKKEYDKEEDRWVF
RGAVRVNGNGQVDSAGLFLVHQKCYQEGATYSDVHVASTPRTQEALSSWGS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgcagcaatcgagtttcttcagagctatgaaagcgagctggtgggcatgcag
cgaccggacaagggagtaataaatgtcctgaccatgctcgcgtccgacaacatcgacgcg
cctccagttgcaaacggcatcgtagcctgtatagaaaaatgcatccgaatgtttcccccc
aacaagaagctcatccctctctacctcatggactcgatcgtcaagaacgtcggagccatc
tacacacatctcttcgtgcagaatctgacagacatcttctgtacctcgttcgctgctgtg
gacaatcaaacgcgtgcatcctacatcaagctgcttgacacatggaaggctcaatctgtc
tttcctcccgctaagaacgaagagattcgcactcgtctcgccgccatgctccagtccggc
atcccctccaatcgtcctggactagaccggcgaccagagcctgagaggagggggatgatg
ccaggggttccagggaacgggtctgggatgatgcctgggtaccacgggggaggaatgcat
cctgctgttgggatgaatccaatgcacggaaacatcccgaacaacccggtcacagtctca
tccatacaagagcagcagactctgctgcagaacagagtgtatggtcttgtcaactctttg
atgccgcagcaacctgctcagcccatggggttgtcgggcttgcctccaaacatgcagatg
atagaatctcacctccttccgcagcccaaccccctccaacagttgttggaggattttcag
cttcaacaggggctcaaggacgcggtaggagtgaaagattccgtcgaagagtatgctcca
aggcagctcaacagtaaggatctcaacagtcgggaggtgttggacgtggtttaccggctc
tacgagggtcagcccttcatctgcaagacagacgggagaagattcagatcacaggaggat
ctcagcaaccaccttgaccggttgtttgagatcaaccgggcaaagaaggagaacttgggg
gcacgagagcggcactggttcaaggtcatctccgagtggaccgcgtgcaaggaccttgtc
ctccgcaagcctgtcgatctgaaggtgcaggtggacgggcagcccccacaagagagcgca
gcctttcaggagagcgtcgtgcctgctgacgacggggcgttcaccggggaccctcgatgc
tcagcgtgcagcgagaagatgaagaaggagtatgacaaggaggaggatcggtgggtgttt
cgaggagccgtcagggtcaacggcaacgggcaagtcgacagcgcaggtctcttcctggtg
catcagaagtgctaccaggagggcgccacctactccgacgtccatgttgcctcgactcct
cgtacccaggaggcgctcagcagctggggctcgtga
DBGET
integrated database retrieval system
