Guillardia theta: GUITHDRAFT_141211
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Entry
GUITHDRAFT_141211 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K14323
protein CASC3
Organism
gtt
Guillardia theta
Pathway
gtt03013
Nucleocytoplasmic transport
gtt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
GUITHDRAFT_141211
03015 mRNA surveillance pathway
GUITHDRAFT_141211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtt03019
]
GUITHDRAFT_141211
Messenger RNA biogenesis [BR:
gtt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GUITHDRAFT_141211
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
17299164
NCBI-ProteinID:
XP_005829524
JGI:
Guith1_141211
UniProt:
L1J330
LinkDB
All DBs
Position
Unknown
AA seq
563 aa
AA seq
DB search
MANDDPAKGMRRARRSADDEEEQSDNEQEEVEVYDSGEEAEECNEEEDGGEYDEGEPIVL
YVVPPSLQVDGDGGEGEEEGEEGDYEGVEDEEEEGDEEEEGDEDKEDEDEDSEQHEKRDD
GKRLEPFEVPKSGRFFLHDDRTEGSPAEDPREETRPRKKLWSENEGKWGHDKFEQLVQEE
EAESRRSVARRGRGGRGGRGGERMMPRPEPQPREQPILGRGGRGNKAGGAVGMPGGRGTA
PRTLSKAPENGSPRMGRGRGREMNEPIRGNAMGRGGEMGRPRERGVPQKHVAARPQPSQH
DDDDEDDDPNDPFPALTAKAGGARRGRGGHQTVTVDLRGSGRGGVKPMQGRPDMRRVEED
DYYNAVVPDRNVNRPSGRRARGNEQVMMAQQQHNANMNAMSPSLAMAPQFTPNAIGGNMS
MNQQQQMQQMQPGAPQQQQWAPEYAQQWPQQFQSPGAQPQYYMVMQGTDGQAQGAYFFPA
PAQPTAVPITQFQYQQTVQQTLPPQMANQLAGSLPTGAMPFTPSVVAPQPNVGAKPSSRR
YTQMTFGNQQIIAANDAGAPEGH
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgacgatccggcaaagggcatgcggagagctcgaaggtcagctgatgacgaa
gaagaacaaagtgacaacgaacaggaagaagtcgaggtctatgacagtggtgaagaagca
gaagaatgcaatgaggaagaagacggtggcgaatatgatgagggtgagcccattgtcttg
tacgttgtgcctccctcattgcaagtagatggcgatggcggtgaaggagaagaagaagga
gaagagggtgattatgaaggagtagaggacgaagaagaggagggagacgaagaagaggag
ggagatgaggacaaagaagacgaagacgaagactccgagcaacatgaaaagcgggacgac
ggcaaaaggctcgaaccatttgaagttcctaaatcaggccgatttttcctccatgacgat
cgtaccgagggcagtccagccgaagatcctcgtgaagaaaccaggccacgcaaaaagttg
tggtccgagaacgaggggaaatggggccatgataaattcgaacaactcgtccaggaggaa
gaggcagaaagcaggagaagtgttgccagaaggggtagaggcggacgtggtgggcgtggt
ggagaacggatgatgcccaggccggaaccgcagcctagagagcaacctatccttggtcga
ggcggtcgagggaacaaagcaggaggagctgttggcatgccggggggacgaggaacagct
ccgaggaccttgagtaaagcgcccgagaacggatcccctcgcatgggaaggggccgcggt
cgtgaaatgaacgaaccaattcgtggtaacgccatgggtagaggtggagagatgggccga
ccgcgcgagagaggagttccgcagaagcatgtcgccgctcgaccgcagccatctcaacac
gatgacgatgacgaggacgatgaccccaacgatcccttccctgcgctcactgccaaggca
ggaggtgccaggagaggtcgcggtggacaccagactgtcactgtagatcttcgtggatcc
ggacgcggtggtgtcaaacccatgcaaggtcgaccagacatgcgacgagtcgaggaggac
gactattacaatgctgttgtgccggatcgtaatgtcaacaggccaagtggccgtcgtgct
cgtggaaacgagcaagtgatgatggcgcaacagcaacacaatgccaacatgaatgcaatg
tcaccttcccttgctatggcacctcagttcactccgaatgcaatcggtggcaatatgagc
atgaaccagcaacaacagatgcagcagatgcaaccaggagctccgcagcagcagcaatgg
gcccccgagtacgcacagcaatggcctcaacagtttcaatctcccggtgcccagccgcag
tattacatggtgatgcagggtaccgacgggcaagcacagggagcatacttctttcctgca
cccgcacagcctactgcagtgccaataacgcaatttcagtatcagcagactgtacagcag
actcttccccctcaaatggcgaaccaattggctggctccttaccaacaggggcgatgccc
ttcaccccctctgttgtggcaccgcagcccaacgtgggtgcaaagccgtcgtccagaaga
tacactcagatgactttcggcaaccagcagatcattgcggccaacgacgccggagcgcca
gaggggcactag
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