Guillardia theta: GUITHDRAFT_156993
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Entry
GUITHDRAFT_156993 CDS
T02925
Name
(RefSeq) 3'-phosphate RNA ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
gtt
Guillardia theta
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gtt03016
]
GUITHDRAFT_156993
Enzymes [BR:
gtt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GUITHDRAFT_156993
Transfer RNA biogenesis [BR:
gtt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GUITHDRAFT_156993
Prokaryotic type
tRNA splicing ligases
GUITHDRAFT_156993
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
ACP_syn_III_C
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
17310085
NCBI-ProteinID:
XP_005840208
JGI:
Guith1_156993
UniProt:
L1JYR6
LinkDB
All DBs
Position
Unknown
AA seq
497 aa
AA seq
DB search
MVVRTYEEECKYVKQVDGTCYRIDKGFVDNMRVPGVFYVNQQIKELLFDELKQFSKTSGA
AAGMGGFLPAMKQLANVAALPGIVGKSIALPDVHAGYGFAIGNVAAFDMSDPEAVVSPGG
VGFDINCGVRLIRTNLFEKDVEPVKEKLAQAVFDHIPVGVGSQGIIPTNSNDLEEALEMG
IDWSLREGYSWPEDKEHCEEYGRMLQADPRKVSSRAKKRGLPQLGTLGAGNHYAEIQVVD
EIFDARAASQMGIEEKGQVVVMIHSGSRGLGHQVATDALTAMDKAMDRDNIRTNDRQLSC
ARIDSQEGQDYLAAMAAAANYAWVNRSSMTFLVRQAFAKVFQSTPDDLDMHLIYDVSHNI
AKVEEHMVDGNIKKLLVHRKGSTRAFPPHHPLIPVDYQFTGQPVLIGPAGMEETFGSTCH
GAGRALSRNKSRNNLDYKDVLQVLQDKGIAIRVASPKLVMEEAPESYKDVTQVVDTCQAA
GISNKVVKLRPIAVIKG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgagaacttacgaggaggagtgtaagtatgtgaagcaggtggacgggacatgc
tacaggatcgacaaaggattcgtagacaacatgagagtccctggtgtcttctacgtcaac
cagcagatcaaggagctcctcttcgacgagctgaagcagttttcaaagacatccggcgct
gcagcggggatgggcggcttccttccggccatgaagcagctagccaatgttgcagcactt
cctggcattgtcggcaaatccatcgctctaccagatgtgcatgcaggttacgggtttgcg
attggtaatgttgcagcgttcgacatgagcgatcccgaggcagtggtatcacctggaggt
gttgggttcgatatcaactgcggagtcaggctgatcagaaccaacttgttcgagaaggac
gtcgagcctgtcaaggagaaacttgcgcaggcagtattcgatcacatccctgtcggggtt
ggttcacaggggattattcctacaaacagcaacgatttggaggaggctctggagatgggg
atagactggagcttgagggaaggatactcctggccggaggataaagaacattgcgaagaa
tatggcagaatgcttcaggcagatccgagaaaagtctcctctagggcaaagaagcgagga
ctgccgcagcttggtacgttgggagcagggaaccactatgcggaaatccaagtcgtggat
gagatttttgatgcaagagcggcatcgcagatgggaatcgaagagaaggggcaggtagta
gtgatgattcactcaggaagtagaggtcttggccatcaggttgcgacagacgctctgact
gctatggacaaagcgatggatcgcgacaatatcaggaccaatgatcgtcagttgtcatgc
gcaaggatcgactcgcaagaagggcaagactacctggcggccatggcagcagcagcgaat
tacgcctgggtcaatcgctcttccatgacgtttctagttcgtcaggcgttcgcaaaagtc
tttcagagtacccccgacgatctagacatgcacctcatctacgacgtttctcacaacatt
gcaaaagtagaagagcacatggtggacggcaatatcaagaaacttcttgttcatcgtaag
ggctcgacgcgtgcatttcctcctcatcatcccttgatcccggtcgattatcagttcaca
ggacagcctgtgctcatcggtcccgcaggaatggaagaaactttcggaagcacctgccac
ggagctgggagagcgctctcaaggaacaagagcagaaacaatttagattacaaggacgtg
ctgcaagttctacaagacaaagggattgcgatccgcgtcgcttctcccaagttggtcatg
gaagaagcccctgagtcgtacaaggacgttacacaggtggtggatacgtgccaggctgca
ggcatatccaacaaagttgtgaagctgagaccaatcgccgtcattaaaggatag
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