Guillardia theta: GUITHDRAFT_158754
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Entry
GUITHDRAFT_158754 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
gtt
Guillardia theta
Pathway
gtt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GUITHDRAFT_158754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtt03019
]
GUITHDRAFT_158754
Messenger RNA biogenesis [BR:
gtt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
GUITHDRAFT_158754
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
GUITHDRAFT_158754
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
ECR1_N_2
KH_6
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
17291964
NCBI-ProteinID:
XP_005822206
JGI:
Guith1_158754
UniProt:
L1IG35
LinkDB
All DBs
Position
Unknown
AA seq
280 aa
AA seq
DB search
MEVVTPGQEIRSEAGFLRGHGTYVWKGKLIASVAGIVQRVNKLVSVVPLKSRYGGQVGDV
VVGRVVEVGQKRWNLDIGAAQSAVLMLSSVNLPEGEHRRRTYEDQLNMRTLFVEGDLVSA
EIHQFFQDGSISVHTRSSKYGKLQNGMLIEVPAYLIRRAKQVLPFSFPSSPFHPPRAPPH
VLSCQSEVAAHSNGYIWITHVLPPEAGEAGDMDELEKLGGGRPASEEDMYTCRKCLCRVR
NSILALAKYHLEIFSTSILDTYESSLKLDIELSSMLDDGN
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgtaactccagggcaagagatcagaagcgaagcagggttcctgcgggggcat
gggacgtatgtgtggaagggcaagctcatagcgtcggtggcggggatagtccagagggtg
aacaagctggtgtcggtagtgccactgaagagccgatatggaggacaagtgggagatgtc
gtggtgggacgagtcgttgaggtcggacagaagcgttggaaccttgacattggagctgct
cagtcggcagtgttgatgttgtcgtcggtgaacctgccggagggagagcacaggaggaga
acgtacgaggatcagctgaacatgcgaacgttgtttgtggagggcgatcttgtaagcgcg
gagattcaccagttctttcaagatggttcgatctccgttcacacaaggtcatccaaatat
ggaaaactgcagaatggaatgttgatagaggtcccagcatacttgattcggagagccaaa
caagtactacccttctcttttccttcctcccccttccatcctccccgcgctcctcctcat
gtgttgtcttgccagtctgaagttgccgctcacagcaacggatacatctggatcacgcat
gtgctccctcctgaggccggggaggcgggtgacatggacgagctggagaagttgggagga
gggcggccagcgagcgaggaagatatgtatacttgcaggaaatgtttgtgcagagtcaga
aactcaatcctggcccttgcgaaataccaccttgagattttctcaacctccattcttgac
acctacgaaagcagcttgaagcttgatattgagttgtcttccatgctcgatgacggtaac
tag
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integrated database retrieval system
