Guillardia theta: GUITHDRAFT_161108
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Entry
GUITHDRAFT_161108 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
gtt
Guillardia theta
Pathway
gtt03013
Nucleocytoplasmic transport
gtt03015
mRNA surveillance pathway
gtt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GUITHDRAFT_161108
09122 Translation
03013 Nucleocytoplasmic transport
GUITHDRAFT_161108
03015 mRNA surveillance pathway
GUITHDRAFT_161108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtt03019
]
GUITHDRAFT_161108
03041 Spliceosome [BR:
gtt03041
]
GUITHDRAFT_161108
Messenger RNA biogenesis [BR:
gtt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GUITHDRAFT_161108
TREX complex
GUITHDRAFT_161108
Spliceosome [BR:
gtt03041
]
Complex C
Other components
EJC/TREX
GUITHDRAFT_161108
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GUITHDRAFT_161108
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Btz
Motif
Other DBs
NCBI-GeneID:
17309565
NCBI-ProteinID:
XP_005839900
JGI:
Guith1_161108
UniProt:
L1JXI2
LinkDB
All DBs
Position
Unknown
AA seq
248 aa
AA seq
DB search
MDKSSKGKPRGRGGGGRGGAIRSGRGGNVGRRPAPYARRGGFGGGGFGRPADVFAEPPTG
GFYMHDDRTDPEPAAPKELSTAGVKMLVSNLAPGVTDQDLEELCEEHGGPVKSAEIFYKK
DGASTGQGEVVFRQRAHAEKVLKGLQGVPLDGLPLKLALVGVPAQAATSQPTMVTITGIG
APARGGYGGGGFGGGGFGGGGFGGGGFRPRRGAARGRGGRGGGGGGGGGRAAPSNEDLDK
GMDSYFQK
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggacaaatcgtccaagggcaaacctcgtggaagaggcggcggaggcagaggaggagct
attcgcagtggccgaggaggaaacgtcggcagacgtcctgcgccttacgccagacgagga
ggattcggtggaggaggcttcggacgccctgcagacgtatttgcggaaccaccaacaggc
ggattttacatgcatgatgatcgcacggatcctgagccggcggcgcccaaggagctttcc
actgcaggtgtgaagatgctcgtgtcaaacctggcccccggagttacggaccaggatttg
gaggagctctgtgaagaacacggtggacctgtgaagagcgccgagatcttttacaagaaa
gatggagcctcaactggtcagggtgaagttgtcttcagacagagagcacatgcggagaag
gtgctcaagggccttcagggagtcccgctcgacggtctccctttgaagctggcgcttgtt
ggcgtcccagctcaggccgctacctcgcagcccacaatggtgaccatcactggcatcggc
gctcccgcacgaggaggctacggaggagggggtttcggaggaggaggcttcggtggagga
ggcttcggaggaggaggattcaggcctagacgtggcgccgcgcgtggacgaggaggacgc
ggaggcggtggaggcggtggaggtggtcgtgctgcgccctccaacgaagatctggacaag
ggaatggactcctacttccagaagtga
DBGET
integrated database retrieval system