Guillardia theta: GUITHDRAFT_50852
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Entry
GUITHDRAFT_50852 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
gtt
Guillardia theta
Pathway
gtt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GUITHDRAFT_50852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gtt03041
]
GUITHDRAFT_50852
Enzymes [BR:
gtt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GUITHDRAFT_50852
Spliceosome [BR:
gtt03041
]
Complex C
Other components
Step II factors
GUITHDRAFT_50852
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
HA2_N
Helicase_RecD
AAA_25
ABC_tran
nSTAND3
Cas3-like_C_2
AAA_19
RsgA_GTPase
ATPase_2
AAA_16
Rad17
Motif
Other DBs
NCBI-GeneID:
17297347
NCBI-ProteinID:
XP_005827724
JGI:
Guith1_50852
UniProt:
L1IXY9
LinkDB
All DBs
Position
Unknown
AA seq
528 aa
AA seq
DB search
EEEDEAVAVTEEAEEEEEEEEEEEEEVMTRTDLLPIQMMKSKILNLLRGNNILVVVGETG
CGKSTQLPKYLLRILGTGRGRIACTQPRRVATVSLAKRVSDELHQRVGQLVGYSIRFEEV
VSDWTRIKFMTDGILIREYSAVIMDEAHERSMHTDILFGVLRKVATRRKDLKIIVTSATM
DAQKFSSYFWNAPIIEVPGKTFPVEIDYTACLVEDYVERAISSVTDIHLGESEGDILVFM
PGQEEASCNGVREIDYLNSTGIDVPPLEIIPVYGTLPAELQLKMFKSGRRRVIIATNIAE
TSLTVDGIVFVIDCGYSKIKCFDPTLGIDALLVVPESRANAKQRAGRAGRTRPGKCFRLF
TEESLKLEMLEAPVPEILRSNLGNVILLLKSMNIGNLLQFDLIDNPPKENILNAMYQLWI
LGALNTEGSLTYLAGQEMIRFPVEPALSKLVCASRDLGLSPALCLLPFLPIRLRGPQEDY
QTAHSKFFLFDSDHLTLLHIFNSWKQAGKSKSWSFFHYLQHRNLHKVR
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
gaggaagaggatgaggcggtagcggtgacggaggaagcagaggaggaggaggaggaggag
gaggaggaggaggaggaggtgatgaccaggaccgatctcctgcccattcaaatgatgaag
tccaagatcttgaacctcctgcgaggtaacaacatccttgtggtagtgggagagaccgga
tgtggcaagagtacccaactgcccaagtacctcctgcgcatccttggaacggggagaggc
cgaattgcatgcacgcagccccgcagagtcgcaactgtgtctctcgccaaacgagtctcg
gacgagctacatcaaagggtcgggcagctcgtcggctactccatcaggtttgaagaggtc
gtcagcgattggaccaggatcaagttcatgacggatgggatactcatcagggagtattct
gctgtgatcatggacgaggcgcacgagcggagtatgcatacagacatcctctttggtgtc
ttgcgcaaggttgcgacgaggaggaaagatctcaagatcattgtgacttctgccaccatg
gacgctcaaaaattctcttcttacttctggaacgctccgatcatcgaggtgccggggaaa
actttcccggtcgaaatcgactacacagcatgtctggtggaggactatgtcgagagggcg
atctcctctgtgaccgacatccatctaggagagtcggagggggacatcctggtgttcatg
ccgggacaggaggaggcaagttgtaacggggtcagagaaatcgactacctcaacagcacc
ggaattgacgttcctccccttgagatcatccccgtctatggcaccttgccagctgagctg
cagctgaagatgttcaaatcagggaggaggagagtgatcatagcaaccaacatcgcagaa
acttctctcactgtcgacggcatcgtgtttgtgattgattgtggatactccaagataaag
tgcttcgacccaaccctgggtatcgacgccctgctagtcgttcctgagagcagggcgaac
gcgaagcagagagctggaagagcagggaggacgagaccaggaaagtgcttcagactgttc
accgaagagtcgctgaagttggagatgctggaggctccagtgccggagatcctgaggagc
aacctgggcaacgtaattctcctcctcaagtcgatgaacatcggcaacctgctgcaattt
gacctgatcgacaacccgcccaaggaaaacatcttgaatgccatgtatcaactttggatc
ctcggggccctgaacaccgagggcagcctcacgtacctggcaggtcaagagatgattcga
tttcctgtggaacccgccctctccaaactcgtttgcgcctccagagacctggggttgtct
cctgccctgtgtttgctccccttcctaccgatccgtctgagagggccgcaggaggactat
cagactgcccactcaaagttcttcctcttcgacagcgatcatctcacccttctccacatc
ttcaactcgtggaaacaggctggaaagagcaagtcctggtcgttcttccattacctgcaa
cacaggaacctgcacaaggtacgg
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