Guillardia theta: GUITHDRAFT_50867
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Entry
GUITHDRAFT_50867 CDS
T02925
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
gtt
Guillardia theta
Pathway
gtt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GUITHDRAFT_50867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gtt03041
]
GUITHDRAFT_50867
Enzymes [BR:
gtt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GUITHDRAFT_50867
Spliceosome [BR:
gtt03041
]
Complex C
Other components
Step II factors
GUITHDRAFT_50867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
T2SSE
AAA_24
AAA_30
Microtub_bd
ATPase
AAA_16
NB-ARC
AAA_7
SRP54
Sigma54_activat
ABC_tran
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
17310365
NCBI-ProteinID:
XP_005840875
JGI:
Guith1_50867
UniProt:
L1K0C3
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
EQALDRDWYDNDEGGTFLDETGAYDPFSSLGGSEASDKPKKRISARQQAWDTDDNKWIEN
QLLNSGVVTANAREKDEEETAGKVHLMVRDIRPPFLDGREVHTKKQDAVATVRDPTSDLA
QIARKGCQSIRTYREKRDLNKCRERFWEVEGSKMGNLMGLKEKPKDDKEDVQQLNEDGEV
NYKATAQFKDHMSEKASLNISYDFAKTKTIKQQRESLPIFTVRHELLRIIRDNQIIVVVG
ETGSGKTTQMAQYLHEDGYSSYGKIGCTQPRRVAAMSVAKRVSEEVGCDLGATVGYAIRF
EDCTSESTLLKFMTDGILLRETLNEKDLDQYSCIIMDEAHERSLNTDVLFGILRQVVSRR
VDLKLIVTSATMDADKFSDFFGGVPVFHIPGRTFPVEILHSKSPVEDYVEAAVKQVMQIH
VSYAKGDILVFMTGQEDIDARVTSSLQERLDELKADGATVAELDIMPIHSMLPSELQAKI
FKAVSGDTRKLVVATNIAETSLTIDGIKYVIDCGFYKLKVYNPRMGMDSLQVTPESQANA
RQRSGRAGRTGPGICWRLFTETAFDFEMLHNTIPEIQRTNLGNVILLLKSLGVNNLLDFD
FMDPPPEENMLNSMYQLWILGALGNTGEITALGKKMVEFPLDPPLSKMLIQAEELRCNQE
VLTIVACLSVGGLSHIFYRPKDRAEESDAAREKFAVPESDHLTMLHVFQQWKANDYRADW
CSSHFLQVKSLKKVREVRSQLQDICATQSMSLFSCAHDWDKVRQAVCSAYFINAARMKGV
GEYENLRTAMKCYLHPTSSLYGIGFTPDYVVYHELVLTTKEYMQCVSVVDPYWLAEQGPM
FFQVKENSFQGRMAQKRRSTRRERVREGYEERERERERERERERERERAREREMRMQ
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
gagcaagcgctagatcgtgattggtacgacaatgatgaaggcgggacgtttcttgatgaa
actggtgcatacgatcctttctcgagccttggtggatccgaggcatcggataaaccaaag
aagaggatctctgccagacaacaagcgtgggatacagacgacaataaatggatagaaaat
cagcttctgaattctggtgttgtcacagccaacgctagagagaaagacgaagaagaaact
gctggcaaagttcatctgatggtgagagatataaggcctccttttcttgatggccgcgaa
gtacacacgaagaaacaggatgccgtcgcgactgttcgtgacccaacctctgatcttgca
caaatagcgaggaaaggatgccaatctattcgaacctatcgtgagaaacgggacttgaac
aaatgtcgtgaacgcttctgggaagtcgaaggctcaaagatgggaaatttgatgggcctg
aaggaaaaaccgaaagatgacaaagaagatgtacagcaattgaatgaagatggagaagtc
aactacaaagctacagcgcagttcaaggatcacatgtcagagaaggcaagtctaaatatt
tcttatgattttgcaaaaactaaaaccataaagcagcagcgagaaagtctccccattttc
actgtccgtcacgagcttttgaggataattcgtgacaatcaaatcattgtcgtggtcgga
gaaacaggaagcggcaagacaacacaaatggcacaatatttacacgaggacggttattca
agttacggaaagataggttgcacacagcctcgtcgcgtggctgcgatgtcagttgcaaag
agggtgagtgaagaagttggctgtgatcttggagctacagtcggttatgcgattcgtttt
gaagattgtaccagtgaatctactctgttgaagttcatgactgacggaatacttcttcgc
gagactctgaacgagaaggatttggaccaatactcctgtatcatcatggacgaggctcat
gagcgttctctcaacactgatgttctttttggtattttgagacaagtggtgtctaggcgt
gtcgatctcaagctaatagtgacctctgcgaccatggatgccgacaagttctcagacttt
tttggtggagttccggtgttccacattccaggcaggacattccccgttgagatcttgcat
agcaaatcgcccgtggaagattatgttgaagcagccgtcaagcaggtcatgcaaatccac
gtgagttacgcgaaaggagacatccttgtgtttatgaccggacaagaggatattgatgca
cgcgtgacctcatctttgcaggagcgacttgacgaacttaaggcggatggcgcgactgtt
gctgagcttgacatcatgcccatccacagtatgttgccgtcagagcttcaggccaaaatt
ttcaaagccgtcagcggcgatacacgaaagctggtcgttgcgacaaatattgcggagact
tcacttactatcgacgggatcaaatatgtcattgattgtggcttctacaaactcaaagtc
tacaacccgcgaatgggaatggattctcttcaagtcacccccgaaagtcaagcgaatgcg
cgacagcgatcgggacgagctggaaggactggcccgggcatctgttggaggctcttcaca
gagactgcctttgactttgaaatgcttcataacaccatccccgagattcaacggacaaat
cttggaaatgtcattctcctcctaaagtctcttggagtcaacaatcttctggatttcgac
tttatggatcctccaccggaagagaacatgttgaattcgatgtatcagttatggattctt
ggtgcgcttgggaacacaggagagatcactgcgttggggaagaagatggttgagttccca
cttgatcctccgctgtcaaagatgctcatccaggcagaggagctgcgttgcaatcaggaa
gtcctgacgatcgtggcgtgtctctctgtgggtgggttgagccacatcttctatcgcccc
aaagatcgtgcggaggagagcgacgcagcgcgcgagaagtttgcggtgccggagagcgat
cacctgacgatgctgcacgtcttccagcagtggaaggcgaatgactatagggcagactgg
tgctcttcccacttcctgcaggtcaagtcgttgaagaaagtgagagaggtcaggtctcaa
ctgcaagacatctgcgccactcagagcatgtcgctcttctcatgcgcgcatgactgggac
aaagtgcgccaagctgtttgctccgcctacttcatcaacgctgcaagaatgaagggagtt
ggagagtatgaaaacttgaggacagcaatgaaatgttatctccacccgacttcatccttg
tatggaatcggcttcacgcccgactacgtggtctaccatgagcttgtcctgaccaccaag
gaatacatgcagtgtgtttccgtggtggatccctactggcttgcggagcagggccccatg
ttcttccaggttaaggagaattcgttccaaggaaggatggcacagaagcgacgaagtacg
aggagagagagggtgagagagggttatgaagagagagagagagagagagagagagagaga
gagagagagagagagagagagagagcaagagagagagagatgcgcatgcag
DBGET
integrated database retrieval system
