Guillardia theta: GUITHDRAFT_78796
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Entry
GUITHDRAFT_78796 CDS
T02925
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 4
KO
K10756
replication factor C subunit 3/5
Organism
gtt
Guillardia theta
Pathway
gtt03030
DNA replication
gtt03410
Base excision repair
gtt03420
Nucleotide excision repair
gtt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GUITHDRAFT_78796 (RFC5)
03410 Base excision repair
GUITHDRAFT_78796 (RFC5)
03420 Nucleotide excision repair
GUITHDRAFT_78796 (RFC5)
03430 Mismatch repair
GUITHDRAFT_78796 (RFC5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gtt03032
]
GUITHDRAFT_78796 (RFC5)
03036 Chromosome and associated proteins [BR:
gtt03036
]
GUITHDRAFT_78796 (RFC5)
03400 DNA repair and recombination proteins [BR:
gtt03400
]
GUITHDRAFT_78796 (RFC5)
DNA replication proteins [BR:
gtt03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
GUITHDRAFT_78796 (RFC5)
DNA Replication Termination Factors
ELG1-RFC complex
GUITHDRAFT_78796 (RFC5)
Chromosome and associated proteins [BR:
gtt03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
GUITHDRAFT_78796 (RFC5)
DNA repair and recombination proteins [BR:
gtt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
GUITHDRAFT_78796 (RFC5)
Check point factors
HRAD17(Rad24)-RFC complex
GUITHDRAFT_78796 (RFC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
RCF1-5-like_lid
AAA_16
AAA_11
AAA_assoc_2
RuvB_N
DUF815
DNAX_ATPase_lid
AAA_14
AAA_5
TniB
AAA_24
AAA_30
AAA_7
Roc
nSTAND3
ResIII
bpMoxR
DEAD
AAA_3
AAA_28
DUF1068
AAA_19
Mg_chelatase
T2SSE
AAA_25
RNA_helicase
AAA_18
ATPase_2
Motif
Other DBs
NCBI-GeneID:
17293304
NCBI-ProteinID:
XP_005823560
JGI:
Guith1_78796
UniProt:
L1ILA5
LinkDB
All DBs
Position
Unknown
AA seq
350 aa
AA seq
DB search
MEEEVPSIPGNAGIDPVVALECPWIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLL
YGPPGTGKTSTVLALAKKVFGPKYKSMTLELNASDDRGIDVVKKEIKDFAGTRTIFGLIV
LLCRTGFKMIILDEADNMTQTAQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRF
RFSPLTSADIQGNLERILDKENIKATPDALKAVEKISGGDMRKCLNILQSSSMASKEVTV
ESIYECTGDPNPSDVMWITHSLCNDSFEDCYHKIFEIQREKGLALIDIVRAVHEQIIKHD
LPSVPFCRLLESLSDLEYRLTAATNEKIQLGSFVGMFGQLKEELASQPCK
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaagttccgtcgattccaggaaatgcgggaatagatccagtggttgccttg
gagtgtccttggattgagaagtatcgaccggagacgctgaacgatgtcgtagcacacaag
gacattttgacaacattggatcgcttccttgagcaggaccgcctccctcatctcctgctg
tatggcccccctggtacaggaaagacgtcaacggttcttgcattggccaaaaaggtgttt
ggtcccaagtataagagtatgaccctggagttgaacgcgtcggacgatcgcggcatcgat
gttgtcaagaaggagatcaaggattttgctggaactaggacgatctttggcttaatcgtt
ctgttgtgtagaaccggcttcaagatgatcattttggacgaggccgacaacatgacacag
actgctcagtttgcgcttcgaagaattatcgagaactacactgcaaacgccagattctgc
ttaatatgcaactatgtcaacaagatcattcctgcacttcagtcgcgttgcactagattt
cgcttttcaccgttgacatccgcggacattcagggcaacctggagaggattttggacaaa
gagaatatcaaagcaaccccagacgcgttgaaagccgtggagaagatttcaggaggagac
atgcgtaagtgtctgaacatcttacagagctcgtcaatggcatccaaagaagtcactgtc
gagagtatctatgagtgcaccggagatccaaacccgtcagacgtgatgtggattacccac
tcactgtgcaacgattcttttgaggactgctaccacaagatctttgagattcagagggag
aagggtctcgccttgatcgacatcgtgagagccgtacacgagcaaatcatcaagcacgat
ctcccttccgtgcctttctgcaggctcttggaatctttgtcagacctcgagtacagactg
acggcggcgaccaatgaaaagattcaactgggatccttcgtcgggatgtttgggcagctc
aaagaagagctggcctctcaaccttgtaaataa
DBGET
integrated database retrieval system
