Guillardia theta: GUITHDRAFT_98435
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Entry
GUITHDRAFT_98435 CDS
T02925
Symbol
CDC48
Name
(RefSeq) CDC48-like protein
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
gtt
Guillardia theta
Pathway
gtt04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gtt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
GUITHDRAFT_98435 (CDC48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gtt03019
]
GUITHDRAFT_98435 (CDC48)
03009 Ribosome biogenesis [BR:
gtt03009
]
GUITHDRAFT_98435 (CDC48)
04131 Membrane trafficking [BR:
gtt04131
]
GUITHDRAFT_98435 (CDC48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gtt04147
]
GUITHDRAFT_98435 (CDC48)
Messenger RNA biogenesis [BR:
gtt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
GUITHDRAFT_98435 (CDC48)
Ribosome biogenesis [BR:
gtt03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
GUITHDRAFT_98435 (CDC48)
Membrane trafficking [BR:
gtt04131
]
SNARE
SNARE associated proteins
Others
GUITHDRAFT_98435 (CDC48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
GUITHDRAFT_98435 (CDC48)
Exosome [BR:
gtt04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
GUITHDRAFT_98435 (CDC48)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_33
CDC48_2
AAA_5
AAA_14
TIP49
NPHP3_N
AAA_22
RNA_helicase
Mg_chelatase
nSTAND3
AAA_17
ATPase_2
AAA_28
Vps4_C
Parvo_NS1
ABC_tran
AAA_7
IstB_IS21
AAA_18
Viral_helicase1
Zeta_toxin
Bac_DnaA
NB-ARC
ResIII
NACHT
AAA_24
DUF815
TsaE
Zot
DPOA2_OB
Motif
Other DBs
NCBI-GeneID:
17289819
NCBI-ProteinID:
XP_005820060
JGI:
Guith1_98435
UniProt:
L1IB53
LinkDB
All DBs
Position
Unknown
AA seq
792 aa
AA seq
DB search
MAAAGGEEKKVLKKKNPNRLIVDDAINDDNSVVSLNLKTMEELQLFRGDTVLLKGKKRRD
TVCIVLADDDCEEAKIRMNKVVRKNLRVRLGDIVVVQACPDVRYGKRIHVLPIDDTIEGV
TGNLFETFLKPYFLEAYRPVRKDDLFLVRGGMRAVEFKVVETDPGDYCIVAPDTVIFCEG
EPIKREDEERLDDVGYDDIGGVRKQLAQIRELVELPLRHPQLFKSLGIKPPKGLLMYGPP
GSGKTLIARAVANETGAFFFLINGPEIMSKMAGESEDNLRKAFAEAEKNAPSIIFIDEID
SIAPKRDKVNGEVERRIVSQLLTLMDGLKARSHIIVMAATNRPNSIDPALRRFGRFDREV
DIGVPDETGRMEVLRIHTKNMKLSDDVNLEQVARETHGYVGADLAALCTEAALQCIREKM
DVIDLEDETIDAEVLESMAVSNDHFRTALGSTNPSALRETVVEVPNVTWDDIGGLEATKR
ELQETVQYPVMYPEQFAKFGMNPSRGVLFYGPPGCGKTLLAKAIANECQSNFISIKGPEL
LTMWFGESEANVREVFDKARQSAPCVLFFDELDSIARARGSSGGDAGGAGDRVMNQLLTE
IDGVGEKKNVFIIGATNRPDIIDPALMRPGRLDQLVYIPLPDYASRVDILKACLRKSPLA
KDISIDEIARATEKFSGADLTEICQRACKYAIRESIEKTIRYKKELEARGEDVMEEDIDP
VPEITKSHFEEAMRFARRSVSDADIRKYDMFSQKLQQERGFGSTFKFSDSAGGGSGQAAG
NDAAADDDDLYN
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagctggcggagaggaaaagaaagtcttgaagaaaaagaacccgaatcgcctc
attgtagacgatgctatcaatgacgacaacagtgtcgtgtctctcaacctgaagaccatg
gaggaacttcagttgtttcgtggagacaccgtgctcctcaagggtaagaagcgacgtgac
acagtctgtattgtgctggccgacgacgattgcgaagaggcaaagatccgcatgaacaaa
gttgtcaggaagaatcttcgtgtacgcttgggagacatcgttgttgtgcaagcttgtccc
gatgtcagatacggcaagaggatccacgttcttcctatcgatgacacgattgagggtgtt
actggaaatctcttcgagactttcttgaagccttattttctcgaggcttatcgccctgtc
cgcaaggatgatctttttcttgtccgtggtggcatgagggcagttgagtttaaggtcgtc
gaaactgatcctggcgactactgcattgttgccccagacactgtcatcttttgtgaggga
gaaccaatcaagcgtgaagacgaagaacgcttagatgacgttggttacgacgatatcggt
ggcgtgcgaaagcagctcgcacagattcgtgagttggttgagctccccctcagacaccct
cagctgttcaaaagtctgggaatcaaaccgccaaagggacttctgatgtatggacctcct
gggtcgggcaagactctcattgcccgtgctgtggcaaatgagaccggtgctttcttcttc
ctcatcaatggcccggagatcatgtccaagatggctggtgaatctgaggataatctccgc
aaggcttttgcagaggctgagaagaacgccccctcaatcattttcattgatgagattgat
agcattgcacccaagcgtgacaaggtcaatggagaagttgagcgacgcattgtttcgcag
cttcttactttgatggatggcttgaaagcacgttctcacatcattgtcatggcggccacc
aaccgtcccaacagcatcgaccccgctctccgtagatttggaaggttcgatcgcgaagtc
gacatcggtgtcccagatgagactggacgtatggaggtcttgagaatccatacgaagaac
atgaagttgtcagatgacgtgaacctcgagcaagttgctcgtgagacccatggatacgtt
ggtgcagatcttgctgccttgtgcacagaagcagcacttcaatgcattcgtgagaagatg
gacgtcatcgaccttgaggatgaaactatcgatgctgaggttcttgaatccatggctgtc
tccaatgatcacttcaggaccgcgttgggaagcacgaatccatcagctctccgtgagaca
gttgttgaagttcccaacgtgacttgggacgacattggtggtttggaagctaccaagcgg
gagctgcaagaaactgttcaatacccggttatgtatcctgagcaatttgcgaagtttggc
atgaatccttcacgcggtgtgttgttctatggtccccctggttgtggcaagacccttctt
gctaaggcaattgcaaatgagtgccaatccaacttcatttccatcaagggtccagagctc
cttaccatgtggtttggtgagtcggaagcgaatgttcgcgaagtgttcgacaaagctcgc
caatctgctccttgcgtgctcttctttgacgagttggactctattgctagagcccgagga
agctccggtggagatgctggtggagctggagacagggtgatgaaccagcttctgacggag
attgatggcgtcggcgagaagaagaatgtcttcatcatcggagctacgaaccgtcctgat
atcatcgaccctgccttgatgagacctggacgtttggaccagcttgtgtacataccactt
ccagattatgcatctcgtgtggacatcttgaaggcttgcctacgcaagtctccacttgcc
aaggatatcagcattgatgaaattgcacgggccacagagaagttcagtggagcagatttg
actgagatctgccagcgtgcttgcaagtacgccattagggagtctatcgagaagaccatc
cgttacaagaaggagctggaggctcgtggtgaagacgtcatggaggaagacattgatccc
gtgcctgagatcactaagagccacttcgaagaagccatgcgcttcgctcgtcgctctgtg
tccgacgctgacatccgcaagtacgatatgttctcgcagaagctgcagcaggagagaggc
tttggcagtaccttcaagtttagtgacagtgctggtggcggaagcggccaggcggctggc
aacgacgctgcagcagatgatgatgatctgtacaactag
DBGET
integrated database retrieval system
