Geotalea uraniireducens: Gura_2699
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Entry
Gura_2699 CDS
T00521
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
gur
Geotalea uraniireducens
Pathway
gur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Gura_2699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gur03019
]
Gura_2699
03016 Transfer RNA biogenesis [BR:
gur03016
]
Gura_2699
Enzymes [BR:
gur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Gura_2699
Messenger RNA biogenesis [BR:
gur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Gura_2699
Transfer RNA biogenesis [BR:
gur03016
]
Prokaryotic type
tRNA degradation factors
Gura_2699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
RNase_II_C_S1
OB_RNR_1st
CSD
OB_Dis3
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
ABQ26873
UniProt:
A5G505
LinkDB
All DBs
Position
complement(3134933..3137224)
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AA seq
763 aa
AA seq
DB search
MKIGKDAVVKLLRSHAGVPMEFRELMQAFGINKAQRPQFKEIIDGFVEDGVLVRLKGRLY
VLPTETAGIVGKLTVHRDGYGFVIPEAGKEDIFIPARYLRENMHGDKVEVRIVAKKRDGK
QEGRIVKTVERGFTKIVGRFESAREFGRVIPDEVRINRDILIPIKASGKAQNGQVVVAEI
TSYPVAGKGLEGRIVEVLGWPDEPEVEVQTIIRKYDLPYIFPAEALSGARAVSQSVTAAD
LEGRTDLRGRPTVTIDGETARDFDDAVSVKREGKGNIRLWVSIADVSHYVKPGSPIDREA
YLRGTSVYFPDRCIPMLPEELSNGICSLNPTVDRLTVTAEMLFGPSGEMLQASFYPSVIK
SAARLTYTIVKNILVEKDQKLCEEYEDLVADLKVMEELALRLMTKRKKRGSIDFDLPEPE
ILLDMQGGTLAIIRAERNLAHKIIEECMLAANEAVASHIEERHIPSLYRVHETPDFAKLQ
DFREFVFNFGYELRLKEESVEPGEFQRLLDQAEGKPEERMINEVLLRCMKQARYSAENLG
HFGLAAASYTHFTSPIRRYPDLVVHRILKTLIGKKFSEKEKEQLAETLPETAVHTSKRER
VAMEAEREIVELKKMQYMRDKIGEEFDGIITGVAAFGFFVELVELFIEGMVHISTLKQDF
YQYVEKQHSLIGEQSRTVFRIGDRVRVRVAAVSLEKKQIEFVLAGMKEAGALKTESYAGE
EFPKIPVRGKWPTAGKGGKKTGSTSGDDKGRKATRGKSERKRR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgaagataggtaaagatgcggtagtaaaactactgcgcagtcatgccggggttcccatg
gagttcagggaactcatgcaggctttcggcataaacaaggcgcaaaggccccagttcaag
gagatcatcgacggcttcgtcgaagatggcgtgctggtcaggctgaaagggcggctctat
gttctgccgacggaaacggccgggatcgtcgggaaactcactgtccaccgcgacggctac
ggtttcgttatcccggaagccggcaaggaagacatcttcataccggcccgatatctgcgg
gaaaacatgcatggcgacaaggtggaggtgcggatcgtagccaaaaaacgggacggcaag
caggagggccgtatcgtaaaaaccgtcgagcgcggtttcactaaaattgtcgggcggttt
gagtcggcgcgagagttcggccgggtgataccggacgaggtgcgcataaaccgggatatc
ctgattccgataaaggcttccggaaaggcgcaaaacggccaggtggtagttgcggagata
acttcctatccggttgccggaaaaggcttggaagggaggatcgtcgaggtgctcggctgg
ccggatgagccggaagtcgaggtgcagacgatcatcaggaagtacgatcttccctatatt
ttccccgccgaggccctgtccggcgcccgcgccgtatcacaatcggtgaccgctgccgac
ctcgaagggagaaccgacctgcgcgggcgaccgaccgtcaccattgacggggaaacggcc
agggatttcgacgatgcggtttcggtgaaaagggagggcaaaggcaatatccggctctgg
gtttctattgcggacgtttcccactacgtgaagcccggttctccaatcgatcgggaggcg
tacctgcgcggcacgtcggtctatttccccgaccgctgcataccgatgctgccggaagag
ctctcaaacggcatctgttcgttaaacccgacggtagacaggctgacggtgacggcggag
atgcttttcggtccgtccggcgagatgctccaggcctcgttttatccgagcgtgataaaa
agcgccgcccgacttacctacaccatcgtcaaaaatatcctggtggagaaggaccagaag
ctctgtgaagagtacgaggaccttgttgccgatctcaaggtgatggaagagctggccctg
cgcctgatgaccaagcggaaaaagcgcggaagcatcgattttgacctgcctgaaccggag
atattgctcgacatgcagggggggacccttgccattatccgcgccgagcgcaacctggcc
cacaagatcatcgaagaatgcatgctcgccgccaacgaggctgtggcctcgcacatcgaa
gagcgccacataccttccctctatcgggtccatgagactccggactttgccaagctgcag
gacttcagagagtttgtcttcaatttcggctatgagctgcgcctcaaggaggagagtgtg
gagccgggtgagttccagcggctcctcgatcaggcggagggaaaaccggaagagcggatg
atcaacgaggtgctactccgctgcatgaagcaggcccgctattctgcggaaaacctcggc
cacttcggccttgccgcagcctcgtacacccatttcacctcgccgatccgccgctatccc
gacctggtggtccaccggatactgaagacgctcatcgggaaaaaattcagcgagaaagag
aaggaacaactcgccgagacgctgccggagaccgctgtccacacgagcaagcgcgagcgg
gtggccatggaggctgagcgggaaatcgtcgaactgaagaagatgcagtacatgcgggac
aagatcggcgaggagttcgacggcatcattaccggcgttgcagccttcggctttttcgtc
gagctggtggagctgtttatcgaagggatggttcatatctcgacgctgaaacaggatttc
taccagtacgtggagaaacagcactccctgatcggcgagcagagccggacggttttcagg
atcggcgaccgggtgcgggtcagggtggctgccgtcagcctggaaaagaagcagatagaa
ttcgtccttgcagggatgaaagaagccggtgcattgaagacggaaagctatgcaggcgag
gagttccccaagatccccgtcagagggaagtggccgactgctggtaagggtggcaagaag
acggggagcacgagcggcgatgacaaagggcggaaggcgacacggggcaaatcggaacga
aaacggagataa
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