Guyparkeria sp. TX1: VWP12_02470
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Entry
VWP12_02470 CDS
T11928
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
guy Guyparkeria sp. TX1
Pathway
guy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
guy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VWP12_02470 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
guy03021
]
VWP12_02470 (rho)
03019 Messenger RNA biogenesis [BR:
guy03019
]
VWP12_02470 (rho)
Transcription machinery [BR:
guy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
VWP12_02470 (rho)
Messenger RNA biogenesis [BR:
guy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VWP12_02470 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
S1CSD-TOTE-2
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
XLZ82022
LinkDB
All DBs
Position
516490..517749
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AA seq
419 aa
AA seq
DB search
MNLTELKSKPVPELMDLAQSMGLENIARTRKQDVIFALLKAHAKTGESIHGDGVLEILSD
GFGFLRSSDGSYLAGPADIYVSPSQIRRFNLQTGDSISGSIRPPKDNERYFALLKIEKIN
FEKPEASKTKILFGDLTPLHAEQRMRMERGNGSTEDLTARIIDIVSPVGKGQRGLIVAPP
KAGKTMLLQNIAQSIAHNHPECDLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPAPRHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTILATALVDTGSKMDEVIYEEFKGTGNMELHLDRRIAEKRVYPAINI
NRSGTRREELLTDAEELQKMWILRKFLHPMGELEAVEFLLDKLQQTKTNNEFYDSMRRG
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctaaccgaactcaagagcaagcccgttccggaactcatggatctggcccagtcg
atggggctggaaaacatcgcccggacccgcaagcaggacgtcatcttcgccctgctcaag
gcccacgcgaaaaccggcgagtcgatccacggtgacggcgtgctggaaatcctctcggac
gggttcggtttcctgcgcagctccgacggctcctatctcgccgggccggccgacatctac
gtctcgccctcgcagatacgccgcttcaacctgcagaccggcgattccatcagcggctcg
atccgaccgcccaaggacaacgagcgctacttcgcgctcttgaagatcgagaagatcaac
ttcgagaagcccgaggcctccaagaccaagatcctgttcggggatctcacgccgctgcac
gccgagcagcgcatgcggatggagcgcggcaacggctcgaccgaggacctgaccgcgcgg
atcatcgacatcgtctcgccggtcggcaagggccagcgcggcctgatcgtcgctccgccg
aaggccggcaagaccatgctgctgcagaacatcgcgcagagcattgcccacaaccacccc
gagtgcgacctgatcgtgctgctgatcgacgagcggcccgaggaagtcaccgaaatgcag
cgcaccgtgcgcggcgaggtggtcgcctcgacgttcgacgagccggccccccgccacgtg
caggtcgccgagatggtaatcgagaaggccaagcgcctggtcgagcacaagcgtgacgtg
gtgatcctgctcgactcgatcacccgcctggctcgcgcctacaacaccgtggtgccgtcc
tcgggcaaggtgctgaccggtggtgtcgacgccaatgccctccaccgtcccaagcgcttc
ttcggcgccgcgcgcaatgtcgaggagggcggcagcctgaccatcctcgccaccgcgctg
gtcgataccggctcgaagatggacgaggtgatctatgaggaattcaagggcaccggcaac
atggagctccacctcgaccggcgcatcgcggaaaagcgcgtctacccggcgatcaacatc
aaccgttccggcacgcgccgggaagagctgctcacggatgccgaggaactgcagaagatg
tggatcctgcgcaagttcctccacccgatgggcgagctcgaggcagtggaattcctgctc
gacaagctgcagcagaccaagaccaacaacgagttctacgactcgatgcgccgcggttga
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