Gardnerella vaginalis 409-05: HMPREF0424_0287
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Entry
HMPREF0424_0287 CDS
T01146
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gva03016
]
HMPREF0424_0287 (truB)
Enzymes [BR:
gva01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HMPREF0424_0287 (truB)
Transfer RNA biogenesis [BR:
gva03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HMPREF0424_0287 (truB)
Prokaryotic type
HMPREF0424_0287 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
ADB13513
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All DBs
Position
307702..308805
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AA seq
367 aa
AA seq
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MCIPDSGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLL
NYMLGHNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIK
QVVSENLVGKIMQAPTAFSAIKINGQRAYDLAREGKSVEIAPREIFVSDFSVSNPRITRG
VSGKLVCDISAKVSCSSGTYIRALARDLGRLLGVGGHLTQLRRTSVGDFSVTDSRVLKLR
SQMREFTDRNGVLQHRSKAVPSDDFDANNMLPKICLNMMDAASHSLPTLSIDENQAKDLR
FGRWIELKSGINYENYPAIAYVPNANTEECDVVAVVELTKNIKSNQIKPIVVFPASEKTG
KLDKYLK
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgtgcataccagattcaggattactgcttgtagataagccgcaaggtgttacaagtcac
gatattgttgcatgcgctcgtcatttgttgcatacaaagcgagttgggcacgcaggaacg
cttgatcctatggcaacaggattgctaatcataggttttggcaacgcaacgcgactttta
aattacatgttggggcacaataaaacctatgaagcagtaatccgcttaggagaagcaact
actactgatgatgcagaaggtgaaattcttccggatgacgcattaaatataggtccgggg
gttcacgtcgctaataaagacatgtcttttgaaaagtcactgtcttttgagcgaattaag
caagttgttagcgaaaatttagtaggcaaaattatgcaagctcctactgctttttctgct
attaaaattaatggtcaacgcgcttatgatttagcgcgcgaaggaaaatcagtagagatt
gctcctagagagatatttgttagtgatttttcagtgagcaatcctcgaattactagggga
gtgagtgggaaactcgtatgcgatatatctgcaaaagtttcttgcagtagtggaacatat
attcgcgctttagctcgtgatttaggtcgcttactaggagttggtggacatcttactcag
cttcgtcgcactagcgttggtgatttttcggttactgattcgcgagttcttaaacttcgc
tcgcaaatgcgagaatttactgatcgcaatggagtattgcagcatcgctcaaaagcagtt
cctagtgacgattttgacgcaaataatatgcttcctaaaatttgcttaaatatgatggat
gcagcttcgcattcgcttccaactttaagcattgatgagaatcaagctaaagacttgcgt
tttgggcgctggattgagcttaaatctggcataaattacgaaaattatcctgcaatagcg
tacgttccaaacgcaaatactgaggaatgtgacgttgttgcagtagttgaattgacaaaa
aatataaaaagtaatcaaatcaaaccaattgtggtatttccggcaagcgagaagactggt
aaactagataagtatttaaaataa
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