Gardnerella vaginalis 409-05: HMPREF0424_0314
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Entry
HMPREF0424_0314 CDS
T01146
Symbol
fni
Name
(GenBank) isopentenyl-diphosphate delta-isomerase, type 2
KO
K01823
isopentenyl-diphosphate Delta-isomerase [EC:
5.3.3.2
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva00900
Terpenoid backbone biosynthesis
gva01100
Metabolic pathways
gva01110
Biosynthesis of secondary metabolites
Module
gva_M00364
C10-C20 isoprenoid biosynthesis, bacteria
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
HMPREF0424_0314 (fni)
Enzymes [BR:
gva01000
]
5. Isomerases
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.2 isopentenyl-diphosphate Delta-isomerase
HMPREF0424_0314 (fni)
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Gene cluster
GFIT
Motif
Pfam:
FMN_dh
GHMP_kinases_N
IMPDH
GHMP_kinases_C
Glu_synthase
MVD-like_N
His_biosynth
NMO
Motif
Other DBs
NCBI-ProteinID:
ADB13528
LinkDB
All DBs
Position
340798..343137
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AA seq
779 aa
AA seq
DB search
MTQVRSSAPGKLYIAGEYAVVDGCAAIVAAVSRYVTVSISDETLNEELRENLQKNAPSSR
NYCGAITSDAEKYKPLLWARASDGSIEIQNDGKYAYVLAAMGVVDAYASEKCAPNINRKS
YNVHISSELDDAKTGRKYGLGSSAAVTVAVIRALCKWYGLNLSTPEICKLALIASSSVKK
SGSGGDVAASSYGGWTMYRAYSREWLEAELTLVKSGCSDFGELLHKKWPRLEVKRLNVDK
SLKLLVGWTGSPASSAKLVSSVESSVKTSAEGSTESSVETSAFDNKNQLFTYEDFCKQSE
ICVQKLARAIEKFEISEISSGFAQNRALLQKLSALTGTVIETHELTKFIEIATCAGVPAK
TSGAGGGDCAIALSTIYDNNVIETMKSTWEANGIKPLNIDVTEIFGTGKPSENIVLDAFV
KSREPNAQSAQSCTIQNRKDAHIALADKQYKTRADSDFDKVRFVPNALPQVALEEIDDSV
SVLGSEVCDSVHWCSPIYINAMTGGSDAAKKVNASLARVAAKNSVAMASGSLSAALRDET
LLSTFSVIRSENPHGFVMANVSAGTSASDALRAVNMIHANALQVHLNAAQELVMQEGDRD
FRNWLCNIESIVSACEALSVPVIVKETGCGISAKDVHRLKDVGVRTVDVSGRGGTNFVTI
ENARRNLGDCDYLADWGLTTVESLVDIRKCDSLKNMEVFASGGVRTPLDVVRALALGASA
VGVAGEFLHTLMHEGEDALSLQIDNWQKQIRVIMALLGCKTVKDLQEKTEFVRADCLGK
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgactcaagtgcgctctagtgccccaggaaagctttatattgctggcgagtatgctgtt
gttgacggctgtgctgcaattgttgctgctgttagtcgttatgtaacagttagcataagt
gatgaaaccttaaacgaagagttacgcgaaaatttgcagaaaaatgcccctagtagcaga
aattattgtggtgcaattacgtcagatgctgaaaaatataaaccgcttctttgggcgcgt
gcatccgacggaagtattgaaatacaaaacgacggaaaatatgcttatgtgctcgctgca
atgggcgtagtcgacgcttatgctagtgagaaatgtgcgccaaatattaaccgcaaaagt
tacaatgtgcatatttctagcgaacttgatgatgcaaaaactggtagaaaatacggtctt
ggatcttctgctgcagtaactgttgcagttattcgcgcgttgtgcaaatggtatggtttg
aatctttcgactccagaaatttgcaagctagcgttgattgcgtcgtcgagtgttaaaaaa
tccggaagcggtggagatgttgctgccagctcttatggcggttggactatgtatcgcgcg
tatagccgagagtggcttgaagctgagctgacgctagtaaaatccggatgctctgatttc
ggtgagttgttgcacaaaaagtggccacgactggaagttaagcgtttaaatgtagataag
tcgctaaaacttttagtcgggtggactggttctcctgcgtctagcgcaaagctagtaagt
agcgtagaaagtagcgttaaaactagtgctgaaggtagtacggaaagtagcgtcgaaact
agtgcttttgacaataaaaatcaactttttacttacgaagatttttgcaaacaaagtgag
atttgcgtgcaaaaacttgcgcgcgcaattgaaaagtttgaaataagcgaaatttctagc
ggttttgctcaaaatcgtgcgttgttacaaaaattaagtgctcttactggaactgttatc
gaaacgcatgaacttacaaaatttattgaaattgcgacttgtgccggtgttcctgcaaaa
actagcggcgcaggcgggggagattgtgcaattgcgctgtcgacaatttatgacaataat
gtaattgaaactatgaaatctacttgggaagccaatggaataaagccattgaatattgat
gttacggaaatttttggaactggtaagccttctgaaaatattgtattagacgcgtttgtt
aagagtcgcgaacctaatgcacaatctgctcaatcttgcacaatacaaaaccgcaaagac
gcgcatattgcgcttgcggacaagcagtataaaactcgtgcagattcagattttgacaaa
gtgcgttttgtgccgaatgctttgccgcaagttgcgcttgaagaaattgacgatagcgtg
agcgtgctaggaagtgaagtatgcgattctgtgcattggtgctcgccgatatatattaac
gcaatgaccggcggaagtgatgctgctaaaaaagtgaatgcaagtcttgctagagttgct
gcaaaaaattctgttgctatggcgagtggatctttgagtgctgctcttcgagacgaaact
ttactcagcactttcagtgtcataagaagcgaaaatccacatggatttgtgatggcaaat
gttagcgctggaactagtgcgtctgatgcattgcgtgctgtaaacatgattcatgcgaat
gcgttacaagtgcatttaaatgctgcacaagagttggttatgcaagaaggcgatcgcgat
tttcgaaattggttgtgcaatattgagtctattgtcagtgcgtgcgaagcactaagcgtg
cctgtgattgtgaaggaaactggatgcggaatttctgctaaagatgttcatcgtcttaaa
gatgttggagtgcgcactgtagatgtttctggtcgtggcggaactaattttgtaacaata
gagaatgctcgcaggaacttaggcgactgtgattatttggctgattggggtcttactact
gttgagtcgctggttgacatacgcaagtgtgattcgttaaaaaatatggaagttttcgca
agtggaggagttcgcacgcctttggatgttgtgcgtgcgttggctttgggtgcttctgca
gttggtgtcgctggcgagtttttgcatacgcttatgcatgaaggtgaggatgcgctttct
ttgcaaattgataactggcagaagcaaattagggtgattatggctcttcttggatgcaag
acagtcaaggatttacaagaaaagactgagttcgtgcgcgcggattgtcttggtaagtga
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