Gardnerella vaginalis 409-05: HMPREF0424_0365
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Entry
HMPREF0424_0365 CDS
T01146
Name
(GenBank) putative ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva03420
Nucleotide excision repair
gva03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0424_0365
03430 Mismatch repair
HMPREF0424_0365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gva03400
]
HMPREF0424_0365
Enzymes [BR:
gva01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0424_0365
DNA repair and recombination proteins [BR:
gva03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0424_0365
MMR (mismatch excision repair)
Other MMR factors
HMPREF0424_0365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
CarD_TRCF_RID
Motif
Other DBs
NCBI-ProteinID:
ADB14304
LinkDB
All DBs
Position
393202..396273
Genome browser
AA seq
1023 aa
AA seq
DB search
MSVSMGASMNANMSAKDSDYGYVSDLLGNPVDSFDSDDRFYENVADANDYANYSYDEYAD
AYAKEPDFTQQEYASDQESVPPQESVPPQESVPPQESVPSQESVPSQQEALAQQELLPQE
SQEYSQNFAHSRVAVDAQKLLDGLNPQQSQAVQYDGPALLIGAGAGSGKTRVLTRRIAWI
LSQKGAWPSQILAITFTNKAAAEMRERLSKLIGSEANTMWVSTFHSACVKILRRSGQYIG
LKSGFSIYDTSDCERLVKIIATELNVDIKRFTPRSILGKISDCKNSLITWREQLDMYAND
YKPGVAGQQIAHAGNSEAVYATIYAEYQHRLSQANAVDFDDLIMRTVQLMREVPEAAQYY
RHKFRYILVDEYQDTNHAQYELIRELAGVDVKQNSANPSQQNNTPASITVVGDSDQSIYA
FRGADIRNIQDFEKDFPNATTIMLEQNYRSTQTILDAANAVISHNQGRKPKKLWTALGKG
TPITGYAADSAQQEAAWVAQEIARLAGEEGVAYSDMAIMYRANAQSRSLEDALVKAGLPY
QLVGGTKFYERREVKDALAYLQSMANPDDDVNMRRILNVPKRGLGARAEALLTLYAQTQG
VSFWQALEHLESIEGMPTRTATKLKEFRELMHNLITCMQNDDSKPSKVIDSILNDSGLLE
DLQRSEDPQDAARVDNLSQLQSVAAEYEQNTPDASVAGFLETTALVADSDQLPDENEDTG
KVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRALEDDGELCEERRLAYVGITRAKQRLYV
TRAAVRAQWGQAQDMLPSQFLDEIPDNLIDWKRRESDVERWGASSRRGDDFDSDFDSDFG
GDFDSDFGGWDDDYSDAFSEKTTYGGSSYSSEKSHGSKSYGRNKSYGSSSYGRNKSYGSS
SYGSSYGKSYSKSYGSSYGSSYGSSYSKSNWSKSSAVKTRKVTAKTAASTNATKVGSTSA
VMNKDNHLNIQDFQVGDKITHDTYGLGTVLATQDKGRNSIITVDFGSDGVKRLMLRVAPI
EKL
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtaagtatgggcgcaagtatgaatgcaaatatgagtgcaaaggatagcgattac
ggatatgtaagtgatttgttggggaatccagttgattcgttcgattctgacgatcgtttt
tacgagaatgttgcggatgcgaatgattatgccaactacagttacgacgagtatgctgac
gcttacgctaaagagcctgattttacgcagcaagaatatgcgtctgatcaagaatcagtg
cctcctcaagaatcagtgcctcctcaagaatcagtgcctcctcaagaatcagtgccttcc
caagaatcagtgccttcccaacaagaagctcttgcccaacaagaactgcttcctcaagaa
tctcaagaatattcccaaaatttcgcacattctagagttgcagttgacgcgcaaaaacta
ctcgacggcttaaatccgcaacaatctcaagcagtccagtacgacggaccggcactgctt
attggagcaggagctggaagcggcaaaacgcgagttcttacgcgaagaatagcttggata
ttaagccaaaaaggtgcctggccaagccaaattcttgccatcacttttacaaacaaagca
gctgccgaaatgcgtgaacgtttaagcaaacttattggtagcgaagcaaatactatgtgg
gtttcgacgttccactctgcatgtgtgaaaatacttcgcagatcaggacagtatattggc
ttaaaatcaggcttttctatttacgatacttccgattgcgagcgattagtaaaaattatt
gcaacagagcttaacgttgatattaagcgttttacgccacgcagcattttgggcaagatt
tcggattgcaaaaatagtttaatcacttggcgtgagcaactagacatgtatgctaacgat
tacaagcctggtgttgcaggtcaacaaattgcgcacgctggcaattctgaagctgtttac
gcaactatttatgcggaatatcagcatcgtttatctcaagcaaatgcggttgattttgac
gatttaattatgcgaactgtgcaactcatgcgcgaagtaccagaagctgcgcaatattac
cgccataagttccgctatattcttgtagacgagtaccaggatacgaatcacgctcaatac
gagcttattcgcgagcttgctggagtggatgtaaagcaaaatagtgcaaatccatctcag
caaaataacactcctgcatcaatcacagttgtaggcgactccgaccagtcgatttacgct
ttccgcggagcagatattcgcaatattcaagactttgaaaaagatttcccaaacgctaca
actattatgcttgagcaaaattatcgctctacgcaaactattttggatgctgcaaatgca
gttatttcgcataatcaaggacgaaagcctaaaaaattgtggacggcattaggtaagggc
actccaattactggttatgcagcagacagtgctcaacaggaagcagcttgggttgcgcaa
gaaatagcgcgattagcaggtgaagagggcgttgcttattcggatatggcgattatgtat
cgcgctaatgcacagtctcgttcgctggaagatgcgctcgttaaagcaggtcttccgtat
caacttgttggcggcacgaagttttacgagcgtcgcgaagtaaaagatgcgctcgcatac
ttgcaatctatggcaaacccagatgacgatgtgaatatgcgccgaattttgaatgtgcct
aagcgtgggcttggagcgcgtgcggaggctttgctaacgctttacgctcaaacacaagga
gttagcttctggcaagctttggagcatttggagtcaatcgaaggcatgccaactcgcact
gcaaccaagcttaaagagttccgcgagcttatgcacaatttaattacttgtatgcaaaac
gatgactcgaaaccttctaaagttattgacagcatactgaacgacagtggtttgctggag
gatttgcaacgttctgaagatcctcaagatgccgctcgcgtggataatttgtcacaattg
cagtcggttgcagctgagtatgagcagaatacgccggatgctagtgttgctggtttcctt
gaaacgacggcgcttgtggctgattcggatcaattgccggatgaaaatgaggacactggt
aaagttacgttgatgacgcttcacacggctaagggtttggagtatccggttgtgttccta
actggcatggagcagggaacttttccgcattctcgcgctttggaagacgatggcgagctt
tgcgaggagcgtcgtcttgcttatgttggtattacgcgagctaagcagcgtttgtatgtt
acgcgtgctgctgttcgtgcgcaatgggggcaggctcaagatatgcttccaagccagttt
ttggatgagattccagataatttgattgattggaagcgcagagagtctgatgttgagcgt
tggggtgcttcgtctagacgcggcgatgatttcgatagcgattttgatagtgattttggc
ggcgattttgatagcgacttcggcggctgggatgacgattatagcgatgcgtttagtgaa
aaaacaacttatggtggaagcagttacagttctgaaaaatcgcatggctctaagtcttac
ggaagaaataaatcgtatggctcgagttcttacggaagaaataaatcgtatggctcgagt
tcttacggatcttcttacggaaagtcttatagcaagtcttatggctcttcttacggttct
tcttacggctcgtcttattctaaatcgaattggtctaagtcaagtgcagtaaaaacgcgc
aaagttaccgcaaaaactgcggcttcaacaaacgcaacaaaagttggttcaacttccgca
gttatgaataaagacaatcatctaaatattcaagacttccaagttggcgacaaaattact
cacgatacttacggcttaggaactgtgctagcaacgcaagataagggcagaaactcaatt
attacagtcgatttcggctccgatggagtaaagcgactaatgcttagagttgcaccaatc
gagaaattgtaa
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