Gardnerella vaginalis 409-05: HMPREF0424_0393
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Entry
HMPREF0424_0393 CDS
T01146
Symbol
lysS
Name
(GenBank) lysine--tRNA ligase
KO
K04567
lysyl-tRNA synthetase, class II [EC:
6.1.1.6
]
Organism
gva
Gardnerella vaginalis 409-05
Pathway
gva00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
HMPREF0424_0393 (lysS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
gva01007
]
HMPREF0424_0393 (lysS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
gva03016
]
HMPREF0424_0393 (lysS)
Enzymes [BR:
gva01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.6 lysine---tRNA ligase
HMPREF0424_0393 (lysS)
Amino acid related enzymes [BR:
gva01007
]
Aminoacyl-tRNA synthetase
Class II (A)
HMPREF0424_0393 (lysS)
Transfer RNA biogenesis [BR:
gva03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
HMPREF0424_0393 (lysS)
Prokaryotic type
Other AARSs
HMPREF0424_0393 (lysS)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_2
tRNA_anti-codon
tRNA-synt_2d
TOBE_3
Motif
Other DBs
NCBI-ProteinID:
ADB13561
LinkDB
All DBs
Position
422568..424265
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AA seq
565 aa
AA seq
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MTDTNTAMSAAQSAAESAAKNAAENEATDTVNEIDTVEHAEMLLAQDEAIAKRVNEGATL
DEAIDPSNKEFGPQAHPEQVQMRVAKRAMMLKEGVQPYPVHLNVTDTIEKVRADFDGKLE
AGEETDTEVGIAGRVLFLRNAGGLCFVKLSAGDGTTIQAMVSKKEIGEESIKSFKQMVDL
GDHLYVRGRVISSKTGELSVFATEWAIAAKALQPLPALHKELSDDTRTRKPYIGMIADEK
IRDMVRRRSRAVASLRRTFDSHDFLEVETPMLQTVHGGAAARPFTTHMNAFDIDLYLRIA
PELFLKRCLVGGIERVFEINRDFRNEGVDATHAPEFTMLEAYQAYGTYDTIAALTKELIQ
KAALDAFGSTKVTLLNGEEYDFGGEWKQITMYGSLSEALGEEITPETSVEHLGAIADKLG
VERDDVENHGKLVEHLWEHFYEDKLYEPTFVRDFPVETSPLVKGHRTKPGMVEKWDLYVR
GFELATGYSELNDPVVQRERFVAQAKDALAGDVEAMDIDEDFIEALGVGMPPAGGMGMGI
DRLLIALTGATIRETITFPLVKPLR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgactgacaccaatactgcaatgtctgccgcgcaaagtgccgcagaatctgccgctaaa
aatgcagcagaaaacgaagcaacagataccgtcaatgaaattgacactgttgaacatgcc
gaaatgttactcgctcaagacgaggcaatcgccaagcgcgtaaacgaaggcgcaaccttg
gatgaagcaatcgacccaagcaataaagaatttgggccacaagctcatcctgagcaggta
cagatgcgcgttgctaagcgtgcaatgatgcttaaggagggtgtgcagccttatcctgtg
catcttaacgttactgacacaatcgaaaaggtgcgtgctgatttcgatggcaagcttgaa
gctggcgaagaaaccgataccgaggttggtattgcaggtcgcgtgcttttcttgcgtaac
gctggcggcttgtgctttgttaagctttctgccggtgacggtactacgattcaggcgatg
gtttccaagaaggaaattggtgaggagtccattaaaagttttaagcagatggtggatttg
ggtgaccacttgtacgttcgtggtcgcgtgatttcttctaagactggcgagctttctgta
tttgcaaccgagtgggcgattgcggctaaggctttgcagccgcttccggctttgcataag
gaattaagcgacgacactcgtacgcgcaagccttatattggcatgattgcggacgagaag
attcgcgatatggttcgcaggcgttcgcgcgctgtggcttctcttcgccgtactttcgac
agtcatgacttcttggaagtcgaaactccaatgttgcaaacggttcacggcggtgctgct
gctcgtccattcacaactcacatgaacgctttcgacattgatctttatttgcgcattgct
ccggagcttttcttgaagcgctgcttggttggtggcattgagcgcgtgtttgaaatcaac
cgcgattttagaaacgaaggcgtggacgcaactcacgctccagagtttacgatgcttgag
gcttaccaggcttacggcacttacgatacgattgctgctcttactaaagagctgattcag
aaggctgcactagacgcattcggatctactaaggtgactttgctcaacggcgaagaatac
gattttggtggcgaatggaagcagattaccatgtacggctcgctttctgaggctttgggc
gaggagattactccggaaacttctgttgagcatttgggtgcgattgcagacaagcttggc
gttgagcgcgatgacgtggaaaatcacggcaagttggttgagcacttgtgggagcacttc
tacgaggataagctttacgagccaacgtttgtgcgcgacttcccagtggagaccagccct
cttgttaagggtcaccgcacaaagccaggaatggttgaaaagtgggatttgtatgtgcgt
ggatttgagcttgcaaccggctactccgagcttaacgatcctgttgtgcagcgcgagcgt
tttgttgctcaagctaaggatgctttggctggagacgttgaggcaatggatattgacgag
gacttcattgaggctctcggcgtcggtatgcctcctgctggcggcatgggaatgggtatt
gatcgcttgctgatcgctcttacgggcgcaactattcgcgagacgattaccttcccactc
gtgaagcctcttcgctag
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