Gardnerella vaginalis 409-05: HMPREF0424_0543
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Entry
HMPREF0424_0543 CDS
T01146
Name
(GenBank) putative YcaO-like family
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
gva
Gardnerella vaginalis 409-05
Brite
KEGG Orthology (KO) [BR:
gva00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gva03009
]
HMPREF0424_0543
Ribosome biogenesis [BR:
gva03009
]
Prokaryotic type
ribosomal protein modification factors
HMPREF0424_0543
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YcaO
Motif
Other DBs
NCBI-ProteinID:
ADB14605
LinkDB
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Position
581409..582671
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AA seq
420 aa
AA seq
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MVNFVSPEREFTLMDSLSSIIEVFALKKWQWSVEVSQWSVEVSALDTTCILDSCVYLDEA
DCADIVLESARGKGLGLESLTSGLYELLEHIVYSNQSVLYSCSSSLRIKGDAILNLSNSA
SKNTDYTFYSMSDNAIASLPPEYCGGKSTGEFSSIDENLIRCYYTNNGWAAGTSIQEATL
HALNELIERDATSNILLSNIFDDVCVEFLIPNCELLKEIKQAIESATGNKVYIVSIPALS
GSVVLSICYKTDREEIPTFGCGASQFLGYATYRSLLELWQELCADKDYSNPEERDRSKRL
NHLVHSYPNIKKALFLEKIRQDSRKFSQKLVSYDICDTLSIPNIGIQINNIVNDLHKYGI
DIWKRDAFHYERKSMKCNPSVVQIVAPGLERFHVIRHGFPAELIGRLRKRKSIMLIRQHN
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggttaattttgtttcacctgaacgagaatttacattgatggattctttgtcatcaatt
attgaggtatttgccttaaagaagtggcaatggagtgttgaagtatcgcaatggagtgtt
gaagtatcagcattagacactacttgtattttggattcgtgtgtttatttagatgaggct
gattgtgcagatattgttttagaatccgctagaggtaaaggtcttgggcttgaatctcta
actagcggtttatatgaattattggaacatatagtatattcgaatcagtctgttttgtat
tcttgttcatcatctcttcgaataaaaggagatgcgattcttaatctttctaattcagca
agcaaaaatactgattatactttttatagtatgagtgataatgctattgcttcgttacca
ccagaatactgcggtggaaagtctactggtgagttttcttctattgatgaaaatttaatt
cgttgctactatacaaataatggatgggccgcaggcacttctatccaagaagcgactttg
catgcgcttaatgaacttattgaacgagatgcaacatctaatattcttctttctaatata
tttgatgatgtatgcgtagagtttttaattcctaattgtgaattattgaaagaaataaaa
caggctattgagagcgcaactggtaacaaggtgtatattgtatcgattccagctttgtct
ggctcagtggtgctatctatatgttataagacagatagagaagaaattcctacttttgga
tgtggcgcatcgcaatttttaggatacgcaacatatcgttcgcttcttgagttatggcaa
gagttatgtgcagataaagattattctaatcctgaagaacgtgatagatccaaaagacta
aaccatcttgtacattcatatccaaatattaagaaagctctattcttagaaaaaattaga
caggatagtaggaaattttcacaaaaattagtgtcatatgatatatgtgacactttatct
attcctaacataggaattcagataaataatatagtaaacgatcttcataagtacggaata
gatatatggaaacgtgacgcattccactatgagcgtaaatcgatgaaatgcaatcctagt
gttgtgcaaattgtcgcaccaggattggaacgttttcatgttattcgtcatggttttcct
gctgaacttataggtcgtctaagaaaacgtaaatcaataatgttgattcgtcaacacaat
taa
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